ID IL16_MOUSE Reviewed; 1322 AA. AC O54824; O70236; Q3TEM4; Q5DTR5; Q8R0G5; Q9QZP6; DT 27-SEP-2004, integrated into UniProtKB/Swiss-Prot. DT 16-JUN-2009, sequence version 3. DT 27-MAR-2024, entry version 178. DE RecName: Full=Pro-interleukin-16; DE Contains: DE RecName: Full=Interleukin-16; DE Short=IL-16; DE AltName: Full=Lymphocyte chemoattractant factor; DE Short=LCF; GN Name=Il16; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND TISSUE SPECIFICITY (ISOFORM 2). RC STRAIN=NFS; TISSUE=Spleen; RX PubMed=9637508; RA Keane J., Nicoll J., Kim S., Wu D.M.H., Cruikshank W.W., Brazer W., RA Natke B., Zhang Y., Center D.M., Kornfeld H.; RT "Conservation of structure and function between human and murine IL-16."; RL J. Immunol. 160:5945-5954(1998). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). RX PubMed=9510557; DOI=10.1007/s002510050374; RA Bannert N., Adler H.S., Werner A., Baier M., Kurth R.; RT "Molecular cloning and sequence analysis of interleukin 16 from nonhuman RT primates and from the mouse."; RL Immunogenetics 47:390-397(1998). RN [3] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION (ISOFORM 1), RP TISSUE SPECIFICITY (ISOFORM 1), INTERACTION WITH GRIN2A; GRIN2D; KCNJ10; RP KCNJ15 AND CACNA1C, AND PROTEOLYTIC PROCESSING. RX PubMed=10479680; DOI=10.1523/jneurosci.19-18-07770.1999; RA Kurschner C., Yuzaki M.; RT "Neuronal interleukin-16 (NIL-16): a dual function PDZ domain protein."; RL J. Neurosci. 19:7770-7780(1999). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=C57BL/6J; TISSUE=Thymus; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Fetal brain; RA Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Nagase T., Ohara O., RA Koga H.; RT "Prediction of the coding sequences of mouse homologues of KIAA gene. The RT complete nucleotide sequences of mouse KIAA-homologous cDNAs identified by RT screening of terminal sequences of cDNA clones randomly sampled from size- RT fractionated libraries."; RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=C57BL/6J, and FVB/N; TISSUE=Brain, and Salivary gland; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [8] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Lung, and Spleen; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). CC -!- FUNCTION: Interleukin-16 stimulates a migratory response in CD4+ CC lymphocytes, monocytes, and eosinophils. Primes CD4+ T-cells for IL-2 CC and IL-15 responsiveness. Also induces T-lymphocyte expression of CC interleukin 2 receptor. Ligand for CD4. CC -!- FUNCTION: Isoform 1 may act as a scaffolding protein that anchors ion CC channels in the membrane. CC -!- FUNCTION: Isoform 2 is involved in cell cycle progression in T-cells. CC Appears to be involved in transcriptional regulation of SKP2 and is CC probably part of a transcriptional repression complex on the core CC promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA- CC binding subunit the GABP transcription factor complex) and HDAC3 thus CC maintaining transcriptional repression and blocking cell cycle CC progression in resting T-cells. CC -!- SUBUNIT: Homotetramer (Probable). Isoform 2 interacts with GRIN2A. CC Isoform 1 interacts with GRIN2D, KCNJ10, KCNJ15 and CACNA1C. Isoform 2 CC interacts (via PDZ 3 domain) with PPP1R12A, PPP1R12B and PPP1R12C. CC Isoform 1 interacts with PPP1R12B. Isoform 3 interacts with GABPB1. CC Isoform 2 interacts (via PDZ 3 domain) with HDAC3 (By similarity). CC {ECO:0000250, ECO:0000305}. CC -!- INTERACTION: CC O54824; Q7TS72: Itpkc; NbExp=3; IntAct=EBI-641708, EBI-648015; CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: [Isoform 1]: Cytoplasm CC {ECO:0000269|PubMed:10479680}. Note=Colocalizes with GRIN2C in neuronal CC cell bodies and neurites. CC -!- SUBCELLULAR LOCATION: [Isoform 2]: Cytoplasm. Nucleus {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative promoter usage; Named isoforms=2; CC Name=1; Synonyms=NIL-16; CC IsoId=O54824-1; Sequence=Displayed; CC Name=2; Synonyms=Pro-IL-16; CC IsoId=O54824-2; Sequence=VSP_037460; CC -!- TISSUE SPECIFICITY: Isoform 1 is expressed in neurons of the cerebellum CC and hippocampus. Isoform 2 is expressed in thymus, spleen and lung. CC -!- PTM: Synthesized as a chemo-attractant inactive precursor which is CC proteolytically cleaved by caspase-3 to yield IL-16. CC {ECO:0000269|PubMed:10479680}. CC -!- MISCELLANEOUS: [Isoform 1]: Produced by alternative promoter usage. Is CC probably proteolytically processed to yield IL-16. CC -!- MISCELLANEOUS: [Isoform 2]: Produced by alternative promoter usage. Is CC proteolytically processed to yield IL-16. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF006001; AAC04383.1; -; mRNA. DR EMBL; AF017111; AAC16039.1; -; mRNA. DR EMBL; AF175292; AAD55393.1; -; mRNA. DR EMBL; AK038319; BAC29967.1; -; mRNA. DR EMBL; AK169551; BAE41224.1; -; mRNA. DR EMBL; AK220455; BAD90484.1; -; mRNA. DR EMBL; CH466543; EDL06877.1; -; Genomic_DNA. DR EMBL; BC026894; AAH26894.1; -; mRNA. DR EMBL; BC058709; AAH58709.1; -; mRNA. DR CCDS; CCDS21412.1; -. [O54824-1] DR CCDS; CCDS90266.1; -. [O54824-2] DR RefSeq; NP_034681.2; NM_010551.3. [O54824-1] DR RefSeq; XP_006507449.1; XM_006507386.3. [O54824-1] DR RefSeq; XP_011239983.1; XM_011241681.2. [O54824-1] DR AlphaFoldDB; O54824; -. DR SMR; O54824; -. DR BioGRID; 200618; 16. DR ELM; O54824; -. DR IntAct; O54824; 13. DR MINT; O54824; -. DR STRING; 10090.ENSMUSP00000001792; -. DR GlyGen; O54824; 2 sites, 1 O-linked glycan (2 sites). DR iPTMnet; O54824; -. DR PhosphoSitePlus; O54824; -. DR EPD; O54824; -. DR jPOST; O54824; -. DR MaxQB; O54824; -. DR PaxDb; 10090-ENSMUSP00000001792; -. DR PeptideAtlas; O54824; -. DR ProteomicsDB; 267230; -. [O54824-1] DR ProteomicsDB; 267231; -. [O54824-2] DR Antibodypedia; 3932; 824 antibodies from 46 providers. DR DNASU; 16170; -. DR Ensembl; ENSMUST00000001792.12; ENSMUSP00000001792.5; ENSMUSG00000001741.13. [O54824-1] DR Ensembl; ENSMUST00000145610.8; ENSMUSP00000146496.2; ENSMUSG00000001741.13. [O54824-2] DR GeneID; 16170; -. DR KEGG; mmu:16170; -. DR UCSC; uc009idr.1; mouse. [O54824-2] DR UCSC; uc009ids.1; mouse. [O54824-1] DR AGR; MGI:1270855; -. DR CTD; 3603; -. DR MGI; MGI:1270855; Il16. DR VEuPathDB; HostDB:ENSMUSG00000001741; -. DR eggNOG; KOG3528; Eukaryota. DR GeneTree; ENSGT00940000156178; -. DR HOGENOM; CLU_007677_0_0_1; -. DR InParanoid; O54824; -. DR OMA; FFTKEAS; -. DR OrthoDB; 3848080at2759; -. DR PhylomeDB; O54824; -. DR TreeFam; TF326303; -. DR Reactome; R-MMU-449836; Other interleukin signaling. DR BioGRID-ORCS; 16170; 1 hit in 80 CRISPR screens. DR ChiTaRS; Il16; mouse. DR PRO; PR:O54824; -. DR Proteomes; UP000000589; Chromosome 7. DR RNAct; O54824; Protein. DR Bgee; ENSMUSG00000001741; Expressed in chordate pharynx and 147 other cell types or tissues. DR ExpressionAtlas; O54824; baseline and differential. DR GO; GO:0062023; C:collagen-containing extracellular matrix; HDA:BHF-UCL. DR GO; GO:0005829; C:cytosol; ISO:MGI. DR GO; GO:0005615; C:extracellular space; IEA:UniProtKB-KW. DR GO; GO:0090543; C:Flemming body; ISO:MGI. DR GO; GO:0005925; C:focal adhesion; ISO:MGI. DR GO; GO:0016607; C:nuclear speck; ISO:MGI. DR GO; GO:0005886; C:plasma membrane; ISO:MGI. DR GO; GO:0042609; F:CD4 receptor binding; ISO:MGI. DR GO; GO:0005125; F:cytokine activity; IDA:MGI. DR GO; GO:0050930; P:induction of positive chemotaxis; IDA:MGI. DR GO; GO:0030595; P:leukocyte chemotaxis; IDA:MGI. DR GO; GO:0050729; P:positive regulation of inflammatory response; ISO:MGI. DR GO; GO:0032730; P:positive regulation of interleukin-1 alpha production; ISO:MGI. DR GO; GO:0032735; P:positive regulation of interleukin-12 production; ISO:MGI. DR GO; GO:0032755; P:positive regulation of interleukin-6 production; ISO:MGI. DR GO; GO:0051924; P:regulation of calcium ion transport; ISO:MGI. DR CDD; cd00992; PDZ_signaling; 4. DR Gene3D; 2.30.42.10; -; 4. DR InterPro; IPR020450; IL-16. DR InterPro; IPR001478; PDZ. DR InterPro; IPR036034; PDZ_sf. DR PANTHER; PTHR48396; PRO-INTERLEUKIN-16; 1. DR PANTHER; PTHR48396:SF2; PRO-INTERLEUKIN-16; 1. DR Pfam; PF00595; PDZ; 4. DR PRINTS; PR01931; INTRLEUKIN16. DR SMART; SM00228; PDZ; 4. DR SUPFAM; SSF50156; PDZ domain-like; 4. DR PROSITE; PS50106; PDZ; 4. DR Genevisible; O54824; MM. PE 1: Evidence at protein level; KW Alternative promoter usage; Chemotaxis; Cytokine; Cytoplasm; Nucleus; KW Phosphoprotein; Reference proteome; Repeat; Secreted; Transcription; KW Transcription regulation. FT CHAIN 1..1322 FT /note="Pro-interleukin-16" FT /id="PRO_0000377546" FT CHAIN 1205..1322 FT /note="Interleukin-16" FT /evidence="ECO:0000250" FT /id="PRO_0000015418" FT DOMAIN 213..299 FT /note="PDZ 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00143" FT DOMAIN 352..437 FT /note="PDZ 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00143" FT DOMAIN 1105..1190 FT /note="PDZ 3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00143" FT DOMAIN 1226..1309 FT /note="PDZ 4" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00143" FT REGION 104..147 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 183..449 FT /note="Interaction with GRIN2A" FT /evidence="ECO:0000250" FT REGION 480..633 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 651..695 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 729..963 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1099..1195 FT /note="Interaction with PPP1R12A, PPP1R12B and PPP1R12C" FT /evidence="ECO:0000250" FT COMPBIAS 104..146 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 480..497 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 505..519 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 531..545 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 568..588 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 600..623 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 660..682 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 729..745 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 825..868 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 887..908 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 935..949 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 917 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q14005" FT VAR_SEQ 1..698 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334, FT ECO:0000303|PubMed:16141072, ECO:0000303|PubMed:9510557, FT ECO:0000303|PubMed:9637508" FT /id="VSP_037460" FT CONFLICT 264 FT /note="I -> S (in Ref. 5; BAD90484)" FT /evidence="ECO:0000305" FT CONFLICT 733 FT /note="T -> R (in Ref. 1; AAC04383)" FT /evidence="ECO:0000305" FT CONFLICT 921 FT /note="G -> S (in Ref. 2; AAC16039)" FT /evidence="ECO:0000305" FT CONFLICT 1067 FT /note="S -> P (in Ref. 2; AAC16039)" FT /evidence="ECO:0000305" FT CONFLICT 1224 FT /note="V -> A (in Ref. 2; AAC16039)" FT /evidence="ECO:0000305" FT CONFLICT 1262..1264 FT /note="TEQ -> DRT (in Ref. 1; AAC04383)" FT /evidence="ECO:0000305" SQ SEQUENCE 1322 AA; 141435 MW; DDB94003A5DCB738 CRC64; MEPHGHSGKS RKSTKFRSIS RSLILCNAKT SDDGSSPDEK YPDPFETSLC QGKEGFFHSS MQLADTFEAG LSNIPDLALA SDSAQLAAAG SDRGKHCRKM FFMKESSSTS SKEKSGKPEA QSSSFLFPKA CHQRTRSNST SVNPYSAGEI DFPMTKKSAA PTDRQPYSLC SNRKSLSQQL DYPILGTARP TRSLSTAQLG QLSGGLQASV ISNIVLMKGQ AKGLGFSIVG GKDSIYGPIG IYVKSIFAGG AAAADGRLQE GDEILELNGE SMAGLTHQDA LQKFKQAKKG LLTLTVRTRL TTPPSLCSHL SPPLCRSLSS STCGAQDSSP FSLESPASPA STAKPNYRIM VEVSLKKEAG VGLGIGLCSI PYFQCISGIF VHTLSPGSVA HLDGRLRCGD EIVEINDSPV HCLTLNEVYT ILSHCDPGPV PIIVSRHPDP QVSEQQLKEA VAQAVEGVKF GKDRHQWSLE GVKRLESSWH GRPTLEKERE KHSAPPHRRA QKIMVRSSSD SSYMSGSPGG SPCSAGAEPQ PSEREGSTHS PSLSPGEEQE PCPGVPSRPQ QESPPLPESL ERESHPPLRL KKSFEILVRK PTSSKPKPPP RKYFKNDSEP QKKLEEKEKV TDPSGHTLPT CSQETRELLP LLLQEDTAGR APCTAACCPG PAASTQTSSS TEGESRRSAS PETPASPGKH PLLKRQARMD YSFDITAEDP WVRISDCIKN LFSPIMSENH SHTPLQPNTS LGEEDGTQGC PEGGLSKMDA ANGAPRVYKS ADGSTVKKGP PVAPKPAWFR QSLKGLRNRA PDPRRPPEVA SAIQPTPVSR DPPGPQPQAS SSIRQRISSF ENFGSSQLPD RGVQRLSLQP SSGETTKFPG KQDGGRFSGL LGQGATVTAK HRQTEVESMS TTFPNSSEVR DPGLPESPPP GQRPSTKALS PDPLLRLLTT QSEDTQGPGL KMPSQRARSF PLTRTQSCET KLLDEKASKL YSISSQLSSA VMKSLLCLPS SVSCGQITCI PKERVSPKSP CNNSSAAEGF GEAMASDTGF SLNLSELREY SEGLTEPGET EDRNHCSSQA GQSVISLLSA EELEKLIEEV RVLDEATLKQ LDSIHVTILH KEEGAGLGFS LAGGADLENK VITVHRVFPN GLASQEGTIQ KGNEVLSING KSLKGATHND ALAILRQARD PRQAVIVTRR TTVEATHDLN SSTDSAASAS AASDISVESK EATVCTVTLE KTSAGLGFSL EGGKGSLHGD KPLTINRIFK GTEQGEMVQP GDEILQLAGT AVQGLTRFEA WNVIKALPDG PVTIVIRRTS LQCKQTTASA DS //