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Protein

Transcriptional activator protein RaiR

Gene

raiR

Organism
Rhizobium etli
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi201 – 220H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processQuorum sensing, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcriptional activator protein RaiR
Gene namesi
Name:raiR
OrganismiRhizobium etli
Taxonomic identifieri29449 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001841771 – 242Transcriptional activator protein RaiRAdd BLAST242

Proteomic databases

PRIDEiO54452

Structurei

3D structure databases

ProteinModelPortaliO54452
SMRiO54452
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini177 – 242HTH luxR-typePROSITE-ProRule annotationAdd BLAST66

Sequence similaritiesi

Family and domain databases

CDDicd06170 LuxR_C_like, 1 hit
Gene3Di1.10.10.10, 1 hit
3.30.450.80, 1 hit
InterProiView protein in InterPro
IPR016032 Sig_transdc_resp-reg_C-effctor
IPR005143 TF_LuxR_autoind-bd_dom
IPR036693 TF_LuxR_autoind-bd_dom_sf
IPR000792 Tscrpt_reg_LuxR_C
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF03472 Autoind_bind, 1 hit
PF00196 GerE, 1 hit
PRINTSiPR00038 HTHLUXR
SMARTiView protein in SMART
SM00421 HTH_LUXR, 1 hit
SUPFAMiSSF46894 SSF46894, 1 hit
SSF75516 SSF75516, 1 hit
PROSITEiView protein in PROSITE
PS50043 HTH_LUXR_2, 1 hit

Sequencei

Sequence statusi: Complete.

O54452-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPSHAEQFS FFLLSGPDLR IADIAGSGND AGRSRPHLCD IAYGSPCDLA
60 70 80 90 100
GATDSNPLLM LTYPPEWVKQ YRDRDYFSID PVVRLGRRGF LPVEWSASGW
110 120 130 140 150
DSGRAYGFFK EAMAFGVGRQ GVTLPVRGPQ GERSLFTVTS NHPDAYWRQF
160 170 180 190 200
RMDSMRDLQF LAHHLHDRAM VLSGMRKVAD LPRLSRRELQ CLEMTANGLL
210 220 230 240
AKQICARLSI SVSAVQLYLA SARRKLTVAT TSEQLLGPRR SN
Length:242
Mass (Da):27,022
Last modified:June 1, 1998 - v1
Checksum:iF1E48D2D3BDCC82D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY708656 Genomic DNA Translation: AAC38173.1

Similar proteinsi

Entry informationi

Entry nameiRAIR_RHIET
AccessioniPrimary (citable) accession number: O54452
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: June 1, 1998
Last modified: May 23, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

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