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Protein
Submitted name:

Orf13

Gene
N/A
Organism
Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi202 – 221H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Orf13Imported
OrganismiRhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti)Imported
Taxonomic identifieri382 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Interactioni

Protein-protein interaction databases

STRINGi266834.SMc03016.

Structurei

3D structure databases

ProteinModelPortaliO54241.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini178 – 243HTH luxR-type DNA-bindingInterPro annotationAdd BLAST66

Phylogenomic databases

eggNOGiENOG4108WDJ. Bacteria.
ENOG4111KMX. LUCA.
HOGENOMiHOG000295327.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiView protein in PROSITE
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O54241-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYLATEDRD DAGRSGRNAR AARAATLVTR LQAMQRQINA KNFAVLRTNG
60 70 80 90 100
RGLPATRKLT CVLHNWGASC EENARDLIML YGDELLQHLD LSLLPVLWNG
110 120 130 140 150
QGEHQTAEVS DFGPFTRRLR ERKLPYSGIA FPIRLGAQGN GYVMFAGSYI
160 170 180 190 200
DASGEQIVEL HGRSAQIMAD LLAADEKRLF KAEALSDREI ACLQMAGDGH
210 220 230 240
ISEEIAEKMG LSVHTVNAYL GAATTKLDSV NRIQAIAKAI RLGYIS
Length:246
Mass (Da):26,957
Last modified:January 1, 1999 - v2
Checksum:iCB573BD4797D7FC4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ224445 Genomic DNA. Translation: CAA11949.1.
RefSeqiWP_003529926.1. NZ_JZXD01000002.1.

Genome annotation databases

KEGGismer:DU99_03315.
PATRICi23630511. VBISinMel96828_2021.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ224445 Genomic DNA. Translation: CAA11949.1.
RefSeqiWP_003529926.1. NZ_JZXD01000002.1.

3D structure databases

ProteinModelPortaliO54241.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266834.SMc03016.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGismer:DU99_03315.
PATRICi23630511. VBISinMel96828_2021.

Phylogenomic databases

eggNOGiENOG4108WDJ. Bacteria.
ENOG4111KMX. LUCA.
HOGENOMiHOG000295327.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiView protein in PROSITE
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO54241_RHIML
AccessioniPrimary (citable) accession number: O54241
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: January 1, 1999
Last modified: February 15, 2017
This is version 115 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.