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Protein
Submitted name:

Putative membrane protein

Gene

SCO5953

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative membrane proteinImported
Gene namesi
Ordered Locus Names:SCO5953Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei191 – 21626HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO5953.

Structurei

3D structure databases

ProteinModelPortaliO54182.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 9286TIRInterPro annotationAdd
BLAST
Domaini338 – 41881WD_REPEATS_REGIONInterPro annotationAdd
BLAST
Domaini463 – 590128WD_REPEATS_REGIONInterPro annotationAdd
BLAST
Domaini795 – 87884WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotation, Transmembrane, Transmembrane helixSequence analysis, WD repeatUniRule annotation

Phylogenomic databases

eggNOGiCOG2319. LUCA.
HOGENOMiHOG000109955.
InParanoidiO54182.
OMAiCERITYN.
OrthoDBiEOG6W9X48.
PhylomeDBiO54182.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
3.40.50.10140. 1 hit.
InterProiIPR011047. Quinoprotein_ADH-like_supfam.
IPR000157. TIR_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF13676. TIR_2. 1 hit.
PF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
SM00320. WD40. 11 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 4 hits.
SSF52200. SSF52200. 1 hit.
PROSITEiPS50104. TIR. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O54182-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGGDGRRID AFVSYSRAAD SRLAPSIQRG LARLAKKWYR TRALNVFRDQ
60 70 80 90 100
TDLSASHALG ASIERALADA RFFVLLASPA AAESKWVAKE IEFWQRNRTS
110 120 130 140 150
DTFLVALTDG TIRWDDEAGD FDWSVTDALP RSLSGYFEAE PLWQDLTWSR
160 170 180 190 200
DADRLSLWHA GFRDAVATLA APIHGSSKRA LDNAEVKEHR ALLLVGALAT
210 220 230 240 250
ALILTLAVSF GIQYWFATAE RDRANANARD ATVMSAIQRA QVELADAETG
260 270 280 290 300
YDVSAYRRLM AARSLAGRPS VEGAAYDAAL DAAYSRPNLL RVTEVDSGPD
310 320 330 340 350
SRAAMTVDGG RVAFGGKEQP TLWSPGTGRP SGPALEAAET TDSKALALAF
360 370 380 390 400
SRDGKRLAAA YEAAVVLWDV ASGKKINEFA TDRRTTTSLA LSPDGTTVAV
410 420 430 440 450
AGGGLRIWDA GSGRRIGEPL GVTGDRVVFS PDGRKLAFDA LNDGGSEVHV
460 470 480 490 500
RGVGAEGAGE VVIPYPHDVI SGIAFTPDTD ALAVGTEDGG LRLWDPDSGA
510 520 530 540 550
AEGRAMSGHQ GAIRAIAFAA GGSRIATAGA DRTIRQWNAE TGSPIGFPLT
560 570 580 590 600
GHAGPVDFIA FSRGGSELVS LGEDATLRRW DAGNALLRTG PDDASAPDAL
610 620 630 640 650
AVAPRGAKVA VGGREGVRVF NQETGVQVAA LDLPQGVLSL SYSPDGTSLL
660 670 680 690 700
IVSPDALRLW EEGAEARTVT LDSSVGPVAG AAFMPHGRQI VVGSYAGKLL
710 720 730 740 750
FEDLDDEATG TPGASIDITC AARHLAVSQD GMQVAYACDD TGGVADAEAG
760 770 780 790 800
GVRTFEAEDR VSALVISPDG RTLILGTLDG TLWRLEHGAE ALVGVGVHRG
810 820 830 840 850
AVRSVAYGPD GRWFASAGED GSVVVHPHGA REISARIPAH TGPVEAVAFS
860 870 880 890 900
GDGSRLISLG ADKAARVWHV FRDPPGDLCE RITYNMSESD WKKWISDSFG
910
YRDQCAGKPR AHG
Length:913
Mass (Da):96,133
Last modified:June 1, 1998 - v1
Checksum:iE06EA81D22875553
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939125 Genomic DNA. Translation: CAA16210.1.
PIRiT35718.
RefSeqiNP_630070.1. NC_003888.3.
WP_011030559.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA16210; CAA16210; CAA16210.
GeneIDi1101395.
KEGGisco:SCO5953.
PATRICi23741806. VBIStrCoe124346_6050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939125 Genomic DNA. Translation: CAA16210.1.
PIRiT35718.
RefSeqiNP_630070.1. NC_003888.3.
WP_011030559.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO54182.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO5953.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA16210; CAA16210; CAA16210.
GeneIDi1101395.
KEGGisco:SCO5953.
PATRICi23741806. VBIStrCoe124346_6050.

Phylogenomic databases

eggNOGiCOG2319. LUCA.
HOGENOMiHOG000109955.
InParanoidiO54182.
OMAiCERITYN.
OrthoDBiEOG6W9X48.
PhylomeDBiO54182.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
3.40.50.10140. 1 hit.
InterProiIPR011047. Quinoprotein_ADH-like_supfam.
IPR000157. TIR_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF13676. TIR_2. 1 hit.
PF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
SM00320. WD40. 11 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 4 hits.
SSF52200. SSF52200. 1 hit.
PROSITEiPS50104. TIR. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-471 / A3(2) / M145Imported.

Entry informationi

Entry nameiO54182_STRCO
AccessioniPrimary (citable) accession number: O54182
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.