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Protein
Submitted name:

Cold-shock domain family protein

Gene

MT0893

Organism
Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciMTBRV:RV0871-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cold-shock domain family proteinImported
Gene namesi
Ordered Locus Names:MT0893Imported
OrganismiMycobacterium tuberculosis (strain CDC 1551 / Oshkosh)Imported
Taxonomic identifieri83331 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
Proteomesi
  • UP000001020 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

  • cell wall Source: MTBBASE
  • cytoplasm Source: UniProtKB-SubCell
  • plasma membrane Source: MTBBASE
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliO53883.
SMRiO53883. Positions 4-59.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 6563CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000070675.
KOiK03704.
OrthoDBiEOG618R0J.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

O53883-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTGKVKWYD PDKGFGFLSQ EGGEDVYVRS SALPTGVEAL KAGQRVEFGI
60 70 80 90 100
ASGRRGPQAL SLRLIEPPPS LSRPRREPAA EHKHSPDELH GMVEDMITLL
110 120 130
ESTVQPELRK GRYPDRKTAR RVAEVVRAVA REFES
Length:135
Mass (Da):15,021
Last modified:June 1, 1998 - v1
Checksum:i494AD2474E8BD996
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000516 Genomic DNA. Translation: AAK45135.1.
PIRiG70816.
RefSeqiWP_003404570.1. NZ_KK341227.1.

Genome annotation databases

EnsemblBacteriaiAAK45135; AAK45135; MT0893.
KEGGimtc:MT0893.
PATRICi18123716. VBIMycTub22151_0982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000516 Genomic DNA. Translation: AAK45135.1.
PIRiG70816.
RefSeqiWP_003404570.1. NZ_KK341227.1.

3D structure databases

ProteinModelPortaliO53883.
SMRiO53883. Positions 4-59.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK45135; AAK45135; MT0893.
KEGGimtc:MT0893.
PATRICi18123716. VBIMycTub22151_0982.

Phylogenomic databases

HOGENOMiHOG000070675.
KOiK03704.
OrthoDBiEOG618R0J.

Enzyme and pathway databases

BioCyciMTBRV:RV0871-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CDC 1551 / OshkoshImported.

Entry informationi

Entry nameiO53883_MYCTO
AccessioniPrimary (citable) accession number: O53883
Secondary accession number(s): Q7D944
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: March 16, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.