Unreviewed, UniProtKB/TrEMBL O52780 (O52780_CLOTM)

Names and origin

Protein names

Submitted name:
    Xylanase U EMBL AAC04579.1

Gene names

Name:

xynU EMBL AAC04579.1

Organism

Clostridium thermocellum EMBL AAC04579.1

Taxonomic identifier

1515 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	683 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Biological process	Xylan degradation
Gene Ontology (GO)
Biological process	xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O52780-1 [UniParc]. Last modified June 1, 1998. Version 1. Checksum: 714BB16E0C9820A2	FASTA	683	74,530
	10 20 30 40 50 60 MRQKLLVTFL ILITFTVSLT LFPVNVRADV VITSNQTGTH GGYNFEYWKD TGNGTMVLKD 70 80 90 100 110 120 GGAFSCEWSN INNILFRKGF KYDETKRHDQ LGYITVTYSC NYQPNGNSYL GVYGWTSNPL 130 140 150 160 170 180 VEYYIIESWG TWRPPGATPK GTITVDGGTY EIYETTRVNQ PSIKGTATFQ QYWSVRTSKR 190 200 210 220 230 240 TSGTISVTEH FKAWERLGMK MGKMYEVALV VEGYQSSGKA DVTSMTITVG NAPSTSSPPG 250 260 270 280 290 300 PTPEPTPRSA FSKIESEEYN SLKSSTIQTI GTSDGGSGIG YIESGDYLVF NKINFGNGAN 310 320 330 340 350 360 SFKARVASGA DTPTNIQLRL GSPTGTLIGT LTVASTGGWN NYEEKSCSIT NTTGQHDLYL 370 380 390 400 410 420 VFSGPVNIDY FIFDSNGVNP TPTSQPQQGQ VLGDLNGDKQ VNSTDYTALK RHLLNITRLS 430 440 450 460 470 480 GTALANADLN GDGKVDSTDL MILHRYLLGI ISSFPRSNPQ PSSNPQPSSN PQPTINPNAK 490 500 510 520 530 540 LVALTFDDGP DNVLTARVLD KLDKYNVKAT FMVVGQRVND STAAIIRRMV NSGHEIGNHS 550 560 570 580 590 600 WSYSGMANMS PDQIRKSIAD TNAVIQKYAG TTPKFFRAPN LETSPTLFNN VDLVFVGGLT 610 620 630 640 650 660 ANDWIPSTTA EQRAGAVING VRDGTIILLH DVQPEPHPTP EALDIIIPTL KSRGYEFVTL 670 680 TELFTLKGVP IDPSVKRMYN SVP

References

[1]	Fernandes A.C., Fontes C.M.G.A., Clarke J.H., Hazlewood G.P., Gilbert H.J., Fernandes T.H., Ferreira L.M.A. Submitted (FEB-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The crystal structure of the family 6 carbohydrate binding module from Cellvibrio mixtus endoglucanase 5a in complex with oligosaccharides reveals two distinct binding sites with different ligand specificities." Pires V.M., Henshaw J.L., Prates J.A., Bolam D.N., Ferreira L.M., Fontes C.M., Henrissat B., Planas A., Gilbert H.J., Czjzek M. J. Biol. Chem. 279:21560-21568(2004) [PubMed: 15010454] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS) OF 248-380.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

AF047761 Genomic DNA. Translation: AAC04579.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1GMM	X-ray	2.00	A	248-380	[»]
1UXX	X-ray	1.60	X	248-380	[»]

SMR

O52780. Positions 480-683.

ModBase

Search...

Protein family/group databases

CAZy

CBM6. Carbohydrate-Binding Module Family 6.
GH11. Glycoside Hydrolase Family 11.

Family and domain databases

InterPro

IPR005084. CBM_6.
IPR002105. Cellulos_enz_dockerin_1_Ca-bd.
IPR006584. Cellulose_bd_IV.
IPR018242. Dockerin_1.
IPR018247. EF_HAND_1.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12_cat.
IPR018208. Glyco_hydro_11_AS.
IPR002509. Polysac_deacetylase.
[Graphical view]

Gene3D

G3DSA:2.60.120.180. Glyco_hydro_11/12_cat. 1 hit.
G3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.

Pfam

PF03422. CBM_6. 1 hit.
PF00404. Dockerin_1. 2 hits.
PF00457. Glyco_hydro_11. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]

PRINTS

PR00911. GLHYDRLASE11.

SMART

SM00606. CBD_IV. 1 hit.
[Graphical view]

PROSITE

PS51175. CBM6. 1 hit.
PS00448. CLOS_CELLULOSOME_RPT. 2 hits.
PS00018. EF_HAND_1. 2 hits.
PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

O52780_CLOTM

Accession

Primary (citable) accession number: O52780

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 1998
Last sequence update:	June 1, 1998
Last modified:	April 14, 2009
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)