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Protein

Nodulation protein J

Gene

nodJ

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Nodulation, Transport

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5603-MONOMER.
SMEL266834:GJF6-5479-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein J
Gene namesi
Name:nodJ
Ordered Locus Names:RA0471
ORF Names:SMa0863
Encoded oniPlasmid pSymA (megaplasmid 1)0 Publication
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001976 Componenti: Plasmid pSymA

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei35 – 5521HelicalSequence analysisAdd
BLAST
Transmembranei62 – 8221HelicalSequence analysisAdd
BLAST
Transmembranei102 – 12221HelicalSequence analysisAdd
BLAST
Transmembranei127 – 14721HelicalSequence analysisAdd
BLAST
Transmembranei148 – 16821HelicalSequence analysisAdd
BLAST
Transmembranei177 – 19721HelicalSequence analysisAdd
BLAST
Transmembranei231 – 25121HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 262262Nodulation protein JPRO_0000182989Add
BLAST

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (NodI) and two transmembrane proteins (NodJ).Curated

Structurei

3D structure databases

ProteinModelPortaliO52619.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 259227ABC transmembrane type-2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000225586.
KOiK09694.
OMAiDYFIFYQ.
OrthoDBiEOG6B627P.

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR005981. ABC_transptNodJ.
[Graphical view]
PANTHERiPTHR30413. PTHR30413. 1 hit.
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
PRINTSiPR00164. ABC2TRNSPORT.
TIGRFAMsiTIGR01291. nodJ. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O52619-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWKLYVAALP ANGWNWIAVW RRNYLAWKKV ALASILGNLA DPLIYLFGLG
60 70 80 90 100
AGLGMMVGRV DGVSYIAFLS AGMVATSAMT ASTFETIYAT FARMRAQRTW
110 120 130 140 150
EAILHTQVTI GDIVLGELAW AATKASLAGT GIGVVAATLG YTEWVSLLYA
160 170 180 190 200
LPVIALTGLA FASLAMIVTA LAPSYEYFIF YQTLVITPML FLSGAVFPVN
210 220 230 240 250
QLPGAFQHVT RILPLAHSID VIRPIMLGSP LVHVGLHIGA LCCYAVVPFF
260
LSTALLRRRL MP
Length:262
Mass (Da):28,341
Last modified:June 1, 1998 - v1
Checksum:i4A1814A3D2FD6901
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF043118 Genomic DNA. Translation: AAB97763.1.
AE006469 Genomic DNA. Translation: AAK65129.1.
PIRiG95320.
RefSeqiNP_435717.1. NC_003037.1.
WP_010967452.1. NC_003037.1.

Genome annotation databases

EnsemblBacteriaiAAK65129; AAK65129; SMa0863.
GeneIDi1235507.
KEGGisme:SMa0863.
PATRICi23627406. VBISinMel96828_0482.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF043118 Genomic DNA. Translation: AAB97763.1.
AE006469 Genomic DNA. Translation: AAK65129.1.
PIRiG95320.
RefSeqiNP_435717.1. NC_003037.1.
WP_010967452.1. NC_003037.1.

3D structure databases

ProteinModelPortaliO52619.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK65129; AAK65129; SMa0863.
GeneIDi1235507.
KEGGisme:SMa0863.
PATRICi23627406. VBISinMel96828_0482.

Phylogenomic databases

HOGENOMiHOG000225586.
KOiK09694.
OMAiDYFIFYQ.
OrthoDBiEOG6B627P.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5603-MONOMER.
SMEL266834:GJF6-5479-MONOMER.

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR005981. ABC_transptNodJ.
[Graphical view]
PANTHERiPTHR30413. PTHR30413. 1 hit.
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
PRINTSiPR00164. ABC2TRNSPORT.
TIGRFAMsiTIGR01291. nodJ. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of nodIJ region of Rhizobium meliloti pSymA."
    Barnett M.J., Long S.R.
    Submitted (JAN-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 1021.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021.

Entry informationi

Entry nameiNODJ_RHIME
AccessioniPrimary (citable) accession number: O52619
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: June 1, 1998
Last modified: November 11, 2015
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.