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Protein
Submitted name:

NodD

Gene

nodD

Organism
Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
NodDImported
Gene namesi
Name:nodDImported
OrganismiRhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti)Imported
Taxonomic identifieri382 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Structurei

3D structure databases

ProteinModelPortaliO52576.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini9 – 6658HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O52576-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPHMRFRGLD LNLLVALDAL MTERKLTAAA RRINLSQPAM SAAIARLRTY
60 70 80 90 100
FGDELFSMQG RELIPTPRAE ALAPAVRDAL LHIQLSVIAW DPINPAQSDR
110 120 130 140 150
RFRIILSDFM ILVFFARIVE RVAREAPGVS FELLPLDDDP HELLRRGDVD
160 170 180 190 200
FLIFPDVFMS SAHPKAKLFD EALVCVGCPT NKKLLGNISF ETYMSMGHVA
210 220 230 240 250
AQFGREMKPS VEQWLLLEHG FNRRIELVVP GFTLIPRLLS GTNRIATLPL
260 270 280 290 300
RLVKYFEQTI PLRIVTSPLP PLFFTEAIQW PALHNTDPGN IWLREILLQE
310
ASRIDPQSDT C
Length:311
Mass (Da):35,245
Last modified:June 1, 1998 - v1
Checksum:i5176674D3CC7E4DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF040724 Genomic DNA. Translation: AAB95383.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF040724 Genomic DNA. Translation: AAB95383.1.

3D structure databases

ProteinModelPortaliO52576.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A Rhizobium strain that nodulates and fixes nitrogen in association with alfalfa and soybean plants."
    Gao W.M., Yang S.S.
    Microbiology 141:1957-1962(1995)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 042BImported.
  2. "The complete sequence of nodD gene from Sinorhizobium meliloti 042B."
    Yang X., Yang S.S.
    Submitted (DEC-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 042BImported.

Entry informationi

Entry nameiO52576_RHIML
AccessioniPrimary (citable) accession number: O52576
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: February 17, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.