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Protein

Endo-1,4-beta-xylanase

Gene

xynD

Organism
Caldicellulosiruptor sp. Rt69B.1
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.PROSITE-ProRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei105NucleophilePROSITE-ProRule annotation1
Active sitei195Proton donorPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidasePROSITE-ProRule annotationImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationPROSITE-ProRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114

Protein family/group databases

CAZyiCBM36 Carbohydrate-Binding Module Family 36
GH11 Glycoside Hydrolase Family 11
mycoCLAPiXYN11D_CALSP

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanasePROSITE-ProRule annotation (EC:3.2.1.8PROSITE-ProRule annotation)
Gene namesi
Name:xynDImported
OrganismiCaldicellulosiruptor sp. Rt69B.1Imported
Taxonomic identifieri70295 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

Structurei

3D structure databases

ProteinModelPortaliO52375
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 208GH11InterPro annotationAdd BLAST193
Domaini243 – 361CBM6InterPro annotationAdd BLAST119

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.PROSITE-ProRule annotation

Family and domain databases

Gene3Di2.60.120.180, 1 hit
2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR013319 GH11/12
IPR018208 GH11_AS_1
IPR033119 GH11_AS_2
IPR033123 GH11_dom
IPR001137 Glyco_hydro_11
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF00457 Glyco_hydro_11, 1 hit
PRINTSiPR00911 GLHYDRLASE11
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit
PS00776 GH11_1, 1 hit
PS00777 GH11_2, 1 hit
PS51761 GH11_3, 1 hit

Sequencei

Sequence statusi: Complete.

O52375-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCVVLANPFY AQAAMTFTSN ATGTYDGYYY ELWKDTGNTT MTVDTGGRFS
60 70 80 90 100
CQWSNINNAL FRTGKKFSTA WNQLGTVKIT YSATYNPNGN SYLCIYGWSR
110 120 130 140 150
NPLVEFYIVE SWGSWRPPGA TSLGTVTIDG ATYDIYKTTR VNQPSIEGTR
160 170 180 190 200
TFDQYWSVRT SKRTSGTVTV TDHFKAWAAK GLNLGTIDQI TLCVEGYQSS
210 220 230 240 250
GSANITQNTF TIGGSSSGSS NGSNNGSNDG SNGGTNAGIS TASRIECESM
260 270 280 290 300
SLSGPYVSRI TYPFNGIALY ANGDRATANV NFSASRNYTF KLRGCGNNNN
310 320 330 340 350
LASVDLLIDG KKVGSFYYKG TYPWEASINN VYVSAGTHRV ELVLSADNGT
360
WDVYADYLLI Q
Length:361
Mass (Da):39,284
Last modified:June 1, 1998 - v1
Checksum:iB6B71AEE62DB9767
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AH005808 Genomic DNA Translation: AAB95327.1

Similar proteinsi

Entry informationi

Entry nameiO52375_9FIRM
AccessioniPrimary (citable) accession number: O52375
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: March 28, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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