O52375 (O52375_9FIRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Endo-1,4-beta-xylanase RuleBase RU004392
EC=3.2.1.8 RuleBase RU004392

Gene names

Name:

xynD EMBL AAB95327.1

Organism

Caldicellulosiruptor sp. Rt69B.1 EMBL AAB95327.1

Taxonomic identifier

70295 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacterales Family III. Incertae Sedis › Caldicellulosiruptor

Protein attributes

Sequence length	361 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans. RuleBase RU004392
Pathway	Glycan degradation; xylan degradation. RuleBase RU004392
Sequence similarities	Belongs to the glycosyl hydrolase 11 (cellulase G) family. RuleBase RU003433

Ontologies

Keywords
Biological process	Xylan degradation RuleBase RU003433 EMBL AAB95327.1
Molecular function	Glycosidase RuleBase RU003433 EMBL AAB95327.1 Hydrolase
Gene Ontology (GO)
Biological process	xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro endo-1,4-beta-xylanase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O52375 [UniParc]. Last modified June 1, 1998. Version 1. Checksum: B6B71AEE62DB9767	FASTA	361	39,284
	10 20 30 40 50 60 MCVVLANPFY AQAAMTFTSN ATGTYDGYYY ELWKDTGNTT MTVDTGGRFS CQWSNINNAL 70 80 90 100 110 120 FRTGKKFSTA WNQLGTVKIT YSATYNPNGN SYLCIYGWSR NPLVEFYIVE SWGSWRPPGA 130 140 150 160 170 180 TSLGTVTIDG ATYDIYKTTR VNQPSIEGTR TFDQYWSVRT SKRTSGTVTV TDHFKAWAAK 190 200 210 220 230 240 GLNLGTIDQI TLCVEGYQSS GSANITQNTF TIGGSSSGSS NGSNNGSNDG SNGGTNAGIS 250 260 270 280 290 300 TASRIECESM SLSGPYVSRI TYPFNGIALY ANGDRATANV NFSASRNYTF KLRGCGNNNN 310 320 330 340 350 360 LASVDLLIDG KKVGSFYYKG TYPWEASINN VYVSAGTHRV ELVLSADNGT WDVYADYLLI Q

References

[1]	"Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain Rt69B.1." Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L. Extremophiles 3:103-111(1999) [PubMed: 10356996] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rt69B.1 EMBL AAB95327.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF036925 Genomic DNA. Translation: AAB95327.1.
3D structure databases
HSSP	HSSP built from PDB template 1F5J based on UniProtKB P77853.
ProteinModelPortal	O52375.
SMR	O52375. Positions 17-211.
ModBase	Search...
Protein family/group databases
CAZy	CBM36. Carbohydrate-Binding Module Family 36. GH11. Glycoside Hydrolase Family 11.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR005084. CMB_fam6. IPR008985. ConA-like_lec_gl. IPR008979. Galactose-bd-like. IPR001137. Glyco_hydro_11. IPR013319. Glyco_hydro_11/12_cat. IPR018208. Glyco_hydro_11_AS. [Graphical view]
Gene3D	G3DSA:2.60.120.180. Glyco_hydro_11/12_cat. 1 hit.
Pfam	PF03422. CBM_6. 1 hit. PF00457. Glyco_hydro_11. 1 hit. [Graphical view]
PRINTS	PR00911. GLHYDRLASE11.
SUPFAM	SSF49899. ConA_like_lec_gl. 1 hit. SSF49785. Gal_bind_like. 1 hit.
PROSITE	PS51175. CBM6. 1 hit. PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit. PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O52375_9FIRM

Accession

Primary (citable) accession number: O52375

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 1998
Last sequence update:	June 1, 1998
Last modified:	September 21, 2011
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)