Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Endo-1,4-beta-xylanase

Gene

xynD

Organism
Caldicellulosiruptor sp. Rt69B.1
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationUniRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114.

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11D_CALSP.

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynDImported
OrganismiCaldicellulosiruptor sp. Rt69B.1Imported
Taxonomic identifieri70295 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

Structurei

3D structure databases

ProteinModelPortaliO52375.
SMRiO52375. Positions 17-211.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini16 – 208193GH11 (glycosyl hydrolase family 11)InterPro annotationAdd
BLAST
Domaini243 – 361119CBM6 (carbohydrate binding type-6)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.UniRule annotation

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O52375-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCVVLANPFY AQAAMTFTSN ATGTYDGYYY ELWKDTGNTT MTVDTGGRFS
60 70 80 90 100
CQWSNINNAL FRTGKKFSTA WNQLGTVKIT YSATYNPNGN SYLCIYGWSR
110 120 130 140 150
NPLVEFYIVE SWGSWRPPGA TSLGTVTIDG ATYDIYKTTR VNQPSIEGTR
160 170 180 190 200
TFDQYWSVRT SKRTSGTVTV TDHFKAWAAK GLNLGTIDQI TLCVEGYQSS
210 220 230 240 250
GSANITQNTF TIGGSSSGSS NGSNNGSNDG SNGGTNAGIS TASRIECESM
260 270 280 290 300
SLSGPYVSRI TYPFNGIALY ANGDRATANV NFSASRNYTF KLRGCGNNNN
310 320 330 340 350
LASVDLLIDG KKVGSFYYKG TYPWEASINN VYVSAGTHRV ELVLSADNGT
360
WDVYADYLLI Q
Length:361
Mass (Da):39,284
Last modified:June 1, 1998 - v1
Checksum:iB6B71AEE62DB9767
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036925 Genomic DNA. Translation: AAB95327.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036925 Genomic DNA. Translation: AAB95327.1.

3D structure databases

ProteinModelPortaliO52375.
SMRiO52375. Positions 17-211.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11D_CALSP.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

UniPathwayiUPA00114.

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain Rt69B.1."
    Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L.
    Extremophiles 3:103-111(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Rt69B.1Imported.

Entry informationi

Entry nameiO52375_9FIRM
AccessioniPrimary (citable) accession number: O52375
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: July 6, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.