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Protein

Beta-xylanase

Gene

xynC

Organism
Caldicellulosiruptor sp. Rt69B.1
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei585NucleophilePROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseUniRule annotationImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

CAZyiCBM22 Carbohydrate-Binding Module Family 22
CBM3 Carbohydrate-Binding Module Family 3
CBM6 Carbohydrate-Binding Module Family 6
GH10 Glycoside Hydrolase Family 10
GH43 Glycoside Hydrolase Family 43

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynCImported
OrganismiCaldicellulosiruptor sp. Rt69B.1Imported
Taxonomic identifieri70295 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 31Sequence analysisAdd BLAST31
ChainiPRO_500415912232 – 1779Beta-xylanaseSequence analysisAdd BLAST1748

Structurei

3D structure databases

ProteinModelPortaliO52374
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini343 – 671GH10InterPro annotationAdd BLAST329
Domaini726 – 876CBM3InterPro annotationAdd BLAST151
Domaini877 – 1027CBM3InterPro annotationAdd BLAST151
Domaini1110 – 1263CBM3InterPro annotationAdd BLAST154
Domaini1651 – 1778CBM6InterPro annotationAdd BLAST128

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.115.10.20, 1 hit
2.60.120.260, 3 hits
2.60.40.710, 3 hits
InterProiView protein in InterPro
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR001956 CBM3
IPR036966 CBM3_sf
IPR006584 Cellulose-bd_IV
IPR003305 CenC_carb-bd
IPR005084 CMB_fam6
IPR008979 Galactose-bd-like_sf
IPR001000 GH10
IPR031158 GH10_AS
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00942 CBM_3, 3 hits
PF02018 CBM_4_9, 2 hits
PF03422 CBM_6, 1 hit
PF00331 Glyco_hydro_10, 1 hit
PF04616 Glyco_hydro_43, 1 hit
PRINTSiPR00134 GLHYDRLASE10
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SM01067 CBM_3, 3 hits
SM00633 Glyco_10, 1 hit
SUPFAMiSSF49384 SSF49384, 3 hits
SSF49785 SSF49785, 3 hits
SSF51445 SSF51445, 1 hit
SSF75005 SSF75005, 1 hit
PROSITEiView protein in PROSITE
PS51172 CBM3, 3 hits
PS51175 CBM6, 1 hit
PS00591 GH10_1, 1 hit
PS51760 GH10_2, 1 hit

Sequencei

Sequence statusi: Complete.

O52374-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKRVISILS LLFFLINTLV GTLIFHQEAK AAAYTVDFEG TDTLSFFAYG
60 70 80 90 100
KSNIAVDMGN AYNGKSSIRV SNRSSIWDGV AVDVKNIMNN GTTWVVSAYV
110 120 130 140 150
KHSYQKPVAF GISAVYDDGS GVKSTLIGEV VAIPNYWKKI VGKWTPNISN
160 170 180 190 200
VRNLLIVVHT IVESGVDYNV DYIQIMDDNS YLSNAVTFSS GFESGTTEGW
210 220 230 240 250
QARGSGVTVK PDSVVAYNGK YSLYVSGRTS NWHGAQIPVD TILEQGKVYK
260 270 280 290 300
ISVWVYQNSG STQKMSLTMQ RRFATDPSTS YENLIYNRDV PSNTWVEPSG
310 320 330 340 350
SYSIPAGVTV SELLLYVEAQ NANLAFWVDD LKIYDLSKLA EPEWEIPSLI
360 370 380 390 400
EKYKDYFKVG VALSYKSIAS DTEKKMVLKH FNSITAGNEM KPSELLISEN
410 420 430 440 450
NYNFSKADEF VNFATSNNIA IRGHTLVWHE QTPDWFFKDA NGNTLSKDAL
460 470 480 490 500
LSRLKQYIYT VVGRYKGKVY AWDVVNEAID ESQGNGFRRS NWYNICGPEY
510 520 530 540 550
IEKAFIWAHE ADPDAKLFYN DYNTENSQKR QFIYNMIKSL KEKGVPIHGI
560 570 580 590 600
GLQCHINLDW PSISEIENTI KLFSSIPGLE IHITELDMSF YQWGSSTSYS
610 620 630 640 650
TPPRDLLIKQ AMRYKELFDL FKKYNVITNV TFWGLKDDYS WLSQNFGKSD
660 670 680 690 700
YPLLFDGNYK SKYAFWSLIE PTVVPVNSTL PAPPAIQVPT PTSTPTPTPT
710 720 730 740 750
PTVSATPTPA PTASPAGGSY WTPSESYGAL KVWYANGNMS STTNVLNPKI
760 770 780 790 800
KIENVGTTAV DLSRVKVRYW YTIDGEAAQS VSVASSINPA YIDVRVVKLG
810 820 830 840 850
ANAGGADYYV EVGFKSGAGV LAAGQSTKEI RLSIQKSSGS YNQSNDYSVR
860 870 880 890 900
SANSYIENEK VTGYIDDVLV WGREPGRNAQ IKVWYANGNL SSPTNVLNPK
910 920 930 940 950
IKIENVGTTA VDLSRVKVRY WYTIDGEATQ SVSVASSINP AYIDVRVVKL
960 970 980 990 1000
GANAGGADYY VEVGFKSGAG VLAAGQSTKE IRLSIQKSSG SYNQSNDYSV
1010 1020 1030 1040 1050
RSANSYIENE KVTGYIDDVL VWGKEPSRGT KPAGEVTPAP TPTSTPTPTP
1060 1070 1080 1090 1100
TTTPAPTSAP TPSPTVTATP TPTPTPTATP TPTPTTTPTP TPTPTVTVTP
1110 1120 1130 1140 1150
TPTPTGTPGT GSGLKVLYKN NETSASTGSI RPWFKIVNGG SSSVDLSRVK
1160 1170 1180 1190 1200
IRYWYTVDGD KPQSAVCDWA QIGASNVTFN FVKLTSGVSG ADYYLEVGFS
1210 1220 1230 1240 1250
SGAGQLQPGK DTGDIQVRFN KNDWSNYNQA DDWSWMQSMT NYGENAKVTL
1260 1270 1280 1290 1300
YVDGVLVWGQ EPGGATPAPT STATPTPTPT ATVTPTPTAT PTPTPTPTAT
1310 1320 1330 1340 1350
TTPIPTPTTP PTKPVGKIPP NNNPLISHKF GADPAVLVYG GRVYMYLTND
1360 1370 1380 1390 1400
ILEYDENGNV KDNSYSKINK ITVISSDDLV NWTDHGEIEV AGPNGVAKWA
1410 1420 1430 1440 1450
NFSWAPAVAY KKINGKDRFF LYFGNSGGGI GVITADSPTG PWSDPLGRPL
1460 1470 1480 1490 1500
ITWSTPGVQG VVWLFDPAVL VDDDGKAYIY FGGGVPQGQD AMPNTARVLQ
1510 1520 1530 1540 1550
PGDDMISVVG SAATIPAPYM FEDSGINKIG NTYYYSYCTN FAQRPQGSPP
1560 1570 1580 1590 1600
AGAIAYMTGK SPVGPWEYRG VILRNPGNFF GVGGNNHHQL FEFNGKWYIA
1610 1620 1630 1640 1650
YHAQTLAKDL GVAKGYRSPH INQVQIENGV IKEVTADYKG VAQVKNFDPY
1660 1670 1680 1690 1700
RMVEAETFAW CAGISTKKAN ASNNMCLTGI DSGDWIALSR VDFGNAGPQK
1710 1720 1730 1740 1750
FEAQVSNING KGYIELRIDS VDGRTIAVAE VLPQSGSSSQ WVKVEANVEN
1760 1770
VTGVHDLYLV FRGEKKSNLF DMDCWRFVR
Length:1,779
Mass (Da):194,305
Last modified:June 1, 1998 - v1
Checksum:iCE5269B6806B5CED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AH005808 Genomic DNA Translation: AAB95326.1
PIRiT31085

Similar proteinsi

Entry informationi

Entry nameiO52374_9FIRM
AccessioniPrimary (citable) accession number: O52374
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: March 28, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health