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Protein

Beta-xylanase

Gene

xynC

Organism
Caldicellulosiruptor sp. Rt69B.1
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM3. Carbohydrate-Binding Module Family 3.
CBM6. Carbohydrate-Binding Module Family 6.
GH10. Glycoside Hydrolase Family 10.
GH43. Glycoside Hydrolase Family 43.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynCImported
OrganismiCaldicellulosiruptor sp. Rt69B.1Imported
Taxonomic identifieri70295 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3131Sequence analysisAdd
BLAST
Chaini32 – 17791748Beta-xylanaseSequence analysisPRO_5004159122Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO52374.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini343 – 671329GH10 (glycosyl hydrolase family 10)InterPro annotationAdd
BLAST
Domaini726 – 876151CBM3 (carbohydrate binding type-3)InterPro annotationAdd
BLAST
Domaini877 – 1027151CBM3 (carbohydrate binding type-3)InterPro annotationAdd
BLAST
Domaini1110 – 1263154CBM3 (carbohydrate binding type-3)InterPro annotationAdd
BLAST
Domaini1651 – 1778128CBM6 (carbohydrate binding type-6)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.115.10.20. 1 hit.
2.60.120.260. 3 hits.
2.60.40.710. 3 hits.
3.20.20.80. 1 hit.
InterProiIPR008965. Carb-bd_dom.
IPR001956. CBD_3.
IPR006584. Cellulose-bd_IV.
IPR003305. CenC_carb-bd.
IPR005084. CMB_fam6.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_beta-prop.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00942. CBM_3. 3 hits.
PF02018. CBM_4_9. 2 hits.
PF03422. CBM_6. 1 hit.
PF00331. Glyco_hydro_10. 1 hit.
PF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00606. CBD_IV. 1 hit.
SM01067. CBM_3. 3 hits.
SM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49384. SSF49384. 3 hits.
SSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
SSF75005. SSF75005. 1 hit.
PROSITEiPS51172. CBM3. 3 hits.
PS51175. CBM6. 1 hit.
PS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O52374-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKRVISILS LLFFLINTLV GTLIFHQEAK AAAYTVDFEG TDTLSFFAYG
60 70 80 90 100
KSNIAVDMGN AYNGKSSIRV SNRSSIWDGV AVDVKNIMNN GTTWVVSAYV
110 120 130 140 150
KHSYQKPVAF GISAVYDDGS GVKSTLIGEV VAIPNYWKKI VGKWTPNISN
160 170 180 190 200
VRNLLIVVHT IVESGVDYNV DYIQIMDDNS YLSNAVTFSS GFESGTTEGW
210 220 230 240 250
QARGSGVTVK PDSVVAYNGK YSLYVSGRTS NWHGAQIPVD TILEQGKVYK
260 270 280 290 300
ISVWVYQNSG STQKMSLTMQ RRFATDPSTS YENLIYNRDV PSNTWVEPSG
310 320 330 340 350
SYSIPAGVTV SELLLYVEAQ NANLAFWVDD LKIYDLSKLA EPEWEIPSLI
360 370 380 390 400
EKYKDYFKVG VALSYKSIAS DTEKKMVLKH FNSITAGNEM KPSELLISEN
410 420 430 440 450
NYNFSKADEF VNFATSNNIA IRGHTLVWHE QTPDWFFKDA NGNTLSKDAL
460 470 480 490 500
LSRLKQYIYT VVGRYKGKVY AWDVVNEAID ESQGNGFRRS NWYNICGPEY
510 520 530 540 550
IEKAFIWAHE ADPDAKLFYN DYNTENSQKR QFIYNMIKSL KEKGVPIHGI
560 570 580 590 600
GLQCHINLDW PSISEIENTI KLFSSIPGLE IHITELDMSF YQWGSSTSYS
610 620 630 640 650
TPPRDLLIKQ AMRYKELFDL FKKYNVITNV TFWGLKDDYS WLSQNFGKSD
660 670 680 690 700
YPLLFDGNYK SKYAFWSLIE PTVVPVNSTL PAPPAIQVPT PTSTPTPTPT
710 720 730 740 750
PTVSATPTPA PTASPAGGSY WTPSESYGAL KVWYANGNMS STTNVLNPKI
760 770 780 790 800
KIENVGTTAV DLSRVKVRYW YTIDGEAAQS VSVASSINPA YIDVRVVKLG
810 820 830 840 850
ANAGGADYYV EVGFKSGAGV LAAGQSTKEI RLSIQKSSGS YNQSNDYSVR
860 870 880 890 900
SANSYIENEK VTGYIDDVLV WGREPGRNAQ IKVWYANGNL SSPTNVLNPK
910 920 930 940 950
IKIENVGTTA VDLSRVKVRY WYTIDGEATQ SVSVASSINP AYIDVRVVKL
960 970 980 990 1000
GANAGGADYY VEVGFKSGAG VLAAGQSTKE IRLSIQKSSG SYNQSNDYSV
1010 1020 1030 1040 1050
RSANSYIENE KVTGYIDDVL VWGKEPSRGT KPAGEVTPAP TPTSTPTPTP
1060 1070 1080 1090 1100
TTTPAPTSAP TPSPTVTATP TPTPTPTATP TPTPTTTPTP TPTPTVTVTP
1110 1120 1130 1140 1150
TPTPTGTPGT GSGLKVLYKN NETSASTGSI RPWFKIVNGG SSSVDLSRVK
1160 1170 1180 1190 1200
IRYWYTVDGD KPQSAVCDWA QIGASNVTFN FVKLTSGVSG ADYYLEVGFS
1210 1220 1230 1240 1250
SGAGQLQPGK DTGDIQVRFN KNDWSNYNQA DDWSWMQSMT NYGENAKVTL
1260 1270 1280 1290 1300
YVDGVLVWGQ EPGGATPAPT STATPTPTPT ATVTPTPTAT PTPTPTPTAT
1310 1320 1330 1340 1350
TTPIPTPTTP PTKPVGKIPP NNNPLISHKF GADPAVLVYG GRVYMYLTND
1360 1370 1380 1390 1400
ILEYDENGNV KDNSYSKINK ITVISSDDLV NWTDHGEIEV AGPNGVAKWA
1410 1420 1430 1440 1450
NFSWAPAVAY KKINGKDRFF LYFGNSGGGI GVITADSPTG PWSDPLGRPL
1460 1470 1480 1490 1500
ITWSTPGVQG VVWLFDPAVL VDDDGKAYIY FGGGVPQGQD AMPNTARVLQ
1510 1520 1530 1540 1550
PGDDMISVVG SAATIPAPYM FEDSGINKIG NTYYYSYCTN FAQRPQGSPP
1560 1570 1580 1590 1600
AGAIAYMTGK SPVGPWEYRG VILRNPGNFF GVGGNNHHQL FEFNGKWYIA
1610 1620 1630 1640 1650
YHAQTLAKDL GVAKGYRSPH INQVQIENGV IKEVTADYKG VAQVKNFDPY
1660 1670 1680 1690 1700
RMVEAETFAW CAGISTKKAN ASNNMCLTGI DSGDWIALSR VDFGNAGPQK
1710 1720 1730 1740 1750
FEAQVSNING KGYIELRIDS VDGRTIAVAE VLPQSGSSSQ WVKVEANVEN
1760 1770
VTGVHDLYLV FRGEKKSNLF DMDCWRFVR
Length:1,779
Mass (Da):194,305
Last modified:June 1, 1998 - v1
Checksum:iCE5269B6806B5CED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036924 Genomic DNA. Translation: AAB95326.1.
PIRiT31085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036924 Genomic DNA. Translation: AAB95326.1.
PIRiT31085.

3D structure databases

ProteinModelPortaliO52374.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM3. Carbohydrate-Binding Module Family 3.
CBM6. Carbohydrate-Binding Module Family 6.
GH10. Glycoside Hydrolase Family 10.
GH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.115.10.20. 1 hit.
2.60.120.260. 3 hits.
2.60.40.710. 3 hits.
3.20.20.80. 1 hit.
InterProiIPR008965. Carb-bd_dom.
IPR001956. CBD_3.
IPR006584. Cellulose-bd_IV.
IPR003305. CenC_carb-bd.
IPR005084. CMB_fam6.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_beta-prop.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00942. CBM_3. 3 hits.
PF02018. CBM_4_9. 2 hits.
PF03422. CBM_6. 1 hit.
PF00331. Glyco_hydro_10. 1 hit.
PF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00606. CBD_IV. 1 hit.
SM01067. CBM_3. 3 hits.
SM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49384. SSF49384. 3 hits.
SSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
SSF75005. SSF75005. 1 hit.
PROSITEiPS51172. CBM3. 3 hits.
PS51175. CBM6. 1 hit.
PS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO52374_9FIRM
AccessioniPrimary (citable) accession number: O52374
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: April 13, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.