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Protein

Beta-xylanase

Gene

xynB

Organism
Caldicellulosiruptor sp. Rt69B.1
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM9. Carbohydrate-Binding Module Family 9.
GH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynBImported
OrganismiCaldicellulosiruptor sp. Rt69B.1Imported
Taxonomic identifieri70295 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3333Sequence analysisAdd
BLAST
Chaini34 – 15951562Beta-xylanaseSequence analysisPRO_5004158896Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO52373.
SMRiO52373. Positions 1034-1222.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini515 – 854340GH10 (glycosyl hydrolase family 10)InterPro annotationAdd
BLAST
Domaini1420 – 148364SLH (S-layer homology)InterPro annotationAdd
BLAST
Domaini1537 – 159559SLH (S-layer homology)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.60.120.260. 3 hits.
2.60.40.1190. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR010502. Carb-bd_dom_fam9.
IPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR001119. SLH_dom.
[Graphical view]
PfamiPF06452. CBM9_1. 2 hits.
PF02018. CBM_4_9. 3 hits.
PF00331. Glyco_hydro_10. 1 hit.
PF00395. SLH. 2 hits.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
PS51272. SLH. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O52373-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRKFVALIV LFVFLISIIA PSLSPFSYQS AMADQQNPAA SYVKFDFENG
60 70 80 90 100
TTQGWSPRGN STTVETVYRI AYEGDYSLKV SGRSAAWDGA IVDVTSSVSV
110 120 130 140 150
NTMYTVSLFV YHNDVKPQRF SVYAYVKDSS GERYIQVADK VVMPQYWKQI
160 170 180 190 200
FGRFTITASN PIQSVKLIVC VPSNRSLEFY ADNIILTSAQ QASSGVVKSC
210 220 230 240 250
NFEGGGTEGW QARGTGSDAQ ISVVDTVAHS GSKSLYVSGR ADTWQGARID
260 270 280 290 300
MTNLLEKGKD YQFSIWVYQN SGSEQEITLT MQRKNADDST KYDTIKWRQK
310 320 330 340 350
VASGVWTEVS GSYTVPQTAT QLIFYVESPN ATLDFYLDDF TVIDKNPPVV
360 370 380 390 400
NPGLIKSCNF ESGTAEDFVA RGSGVTVTVV DNVYYHSETK ALYVSGRADT
410 420 430 440 450
WQGAQIDMTN LLEKGKDYQF SIWVYQNSGS DQKITLTMQR KNADDSTNYD
460 470 480 490 500
TIKWQQTVPS GVWTEVSGSY TVPQTATQLI FYVESPNATL DFYLDDFTVI
510 520 530 540 550
DKNPVTIPAA AKEPELEIPS LCQQYSQYFS IGVAIPYRVL QNPVERAMVL
560 570 580 590 600
KHFNSITAEN EMKPDAIQRT EGQFNFDVAD QYVDFAQSNN IGIRGHTLVW
610 620 630 640 650
HQQTPDWFFQ HSDGSPLDPN NSEDKQLLRN RLKTHIQTLV GRYAEKVYAW
660 670 680 690 700
DVVNEAIDEN QPDGYRRSEW YRILGPTPET GGIPEYIILA FQYAREADPN
710 720 730 740 750
AKLFYNDYST ENPKKRQFIY NMVKALHDRG LIDGVGLQGH INVDSPAVKE
760 770 780 790 800
IEDTINLFST IPGLQIQITE LDISVYTSST QQYDTLPQDI MIKQALKFKE
810 820 830 840 850
LFEMLKRHSD RITNVTLWGL KDDYPWLSKD RSNWPLLFDS NYQAKYNYWA
860 870 880 890 900
IVEPSVLPVA INKGYANNAQ PRIDGIMDKE YKGTIPLSVL NDAGQDIAQV
910 920 930 940 950
RALWSGNELC LYVTVNDSSV DANNDRVVIF IDQDNGKLPE LKDDDFWVSI
960 970 980 990 1000
SRNGTKNQSK TGYVKDYVVL QQLNGYTMEV KLLLNNSLAI NTNIGFDIAV
1010 1020 1030 1040 1050
IDNGQQYSWN DRTNSQYFET DNYGILTMAD SIKFASAQKG TPKIDAELDD
1060 1070 1080 1090 1100
AWKNAQEIVT DTKVTVTGTV YDSAYAKARM MWDENCIYVY AVVYDPLLNK
1110 1120 1130 1140 1150
ANTNPWEQDS IEIFIDENNH KTPYYEDDDV QYRVSYENTQ TFGTNGDAKN
1160 1170 1180 1190 1200
FITATKIIPN GYVVEVQVYM RTTKLSEGMV IGFDIQVNDA DHTGGRVGVL
1210 1220 1230 1240 1250
TWNDKVGNNW RDTTKFGCLE LVAAPAQQPT TQQPSTSPST STTVTTVITP
1260 1270 1280 1290 1300
ATPAPSQQQT TQQQQTQQQQ QSQQTQTTAQ QQQKTEISAT QNQAIVKLEA
1310 1320 1330 1340 1350
DKPATVALGQ DIKVVISPNA VTNKNATVKV EKIEKVSPDI GLGVTIAPAV
1360 1370 1380 1390 1400
KVDVENGELV KAVQVEIKVD PISFKDDKIP FAFVIDDTNK TSIVPVKKEV
1410 1420 1430 1440 1450
NKVIVNTPKE GTIIVVAAKL EDVYKDVPKT HWAYDTFKQA VTSGLVVGYN
1460 1470 1480 1490 1500
DMTLRPAKNV TLAEAAVIVQ RAFEVRPKDA GKPANVPDWA ASAIKALLDN
1510 1520 1530 1540 1550
EIIAEVDDAN KPLTRIEAVA IIMKVLENSG INVEPADIEF SDLYEQSSID
1560 1570 1580 1590
VEYLAKAYKL GIVKGYPDGT FRPQNTVTRA ELLTLLFRAL NSIKK
Length:1,595
Mass (Da):178,404
Last modified:June 1, 1998 - v1
Checksum:iBC31B2363F30EF5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036923 Genomic DNA. Translation: AAB95325.1.
PIRiT31082.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036923 Genomic DNA. Translation: AAB95325.1.
PIRiT31082.

3D structure databases

ProteinModelPortaliO52373.
SMRiO52373. Positions 1034-1222.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM9. Carbohydrate-Binding Module Family 9.
GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.120.260. 3 hits.
2.60.40.1190. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR010502. Carb-bd_dom_fam9.
IPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR001119. SLH_dom.
[Graphical view]
PfamiPF06452. CBM9_1. 2 hits.
PF02018. CBM_4_9. 3 hits.
PF00331. Glyco_hydro_10. 1 hit.
PF00395. SLH. 2 hits.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
PS51272. SLH. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO52373_9FIRM
AccessioniPrimary (citable) accession number: O52373
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: April 13, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.