O52373 (O52373_9FIRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Family 10 xylanase EMBL AAB95325.1
EC=3.2.1.8 EMBL AAB95325.1

Gene names

Name:

xynB EMBL AAB95325.1

Organism

Caldicellulosiruptor sp. Rt69B.1 EMBL AAB95325.1

Taxonomic identifier

70295 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacterales Family III. Incertae Sedis › Caldicellulosiruptor

Protein attributes

Sequence length	1595 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 10 (cellulase F) family. RuleBase RU003432

Ontologies

Keywords
Biological process	Xylan degradation EMBL AAB95325.1
Molecular function	Glycosidase RuleBase RU003432 EMBL AAB95325.1 Hydrolase
Gene Ontology (GO)
Biological process	carbohydrate catabolic process Inferred from electronic annotation. Source: InterPro xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro endo-1,4-beta-xylanase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O52373 [UniParc]. Last modified June 1, 1998. Version 1. Checksum: BC31B2363F30EF5B	FASTA	1,595	178,404
	10 20 30 40 50 60 MKRKFVALIV LFVFLISIIA PSLSPFSYQS AMADQQNPAA SYVKFDFENG TTQGWSPRGN 70 80 90 100 110 120 STTVETVYRI AYEGDYSLKV SGRSAAWDGA IVDVTSSVSV NTMYTVSLFV YHNDVKPQRF 130 140 150 160 170 180 SVYAYVKDSS GERYIQVADK VVMPQYWKQI FGRFTITASN PIQSVKLIVC VPSNRSLEFY 190 200 210 220 230 240 ADNIILTSAQ QASSGVVKSC NFEGGGTEGW QARGTGSDAQ ISVVDTVAHS GSKSLYVSGR 250 260 270 280 290 300 ADTWQGARID MTNLLEKGKD YQFSIWVYQN SGSEQEITLT MQRKNADDST KYDTIKWRQK 310 320 330 340 350 360 VASGVWTEVS GSYTVPQTAT QLIFYVESPN ATLDFYLDDF TVIDKNPPVV NPGLIKSCNF 370 380 390 400 410 420 ESGTAEDFVA RGSGVTVTVV DNVYYHSETK ALYVSGRADT WQGAQIDMTN LLEKGKDYQF 430 440 450 460 470 480 SIWVYQNSGS DQKITLTMQR KNADDSTNYD TIKWQQTVPS GVWTEVSGSY TVPQTATQLI 490 500 510 520 530 540 FYVESPNATL DFYLDDFTVI DKNPVTIPAA AKEPELEIPS LCQQYSQYFS IGVAIPYRVL 550 560 570 580 590 600 QNPVERAMVL KHFNSITAEN EMKPDAIQRT EGQFNFDVAD QYVDFAQSNN IGIRGHTLVW 610 620 630 640 650 660 HQQTPDWFFQ HSDGSPLDPN NSEDKQLLRN RLKTHIQTLV GRYAEKVYAW DVVNEAIDEN 670 680 690 700 710 720 QPDGYRRSEW YRILGPTPET GGIPEYIILA FQYAREADPN AKLFYNDYST ENPKKRQFIY 730 740 750 760 770 780 NMVKALHDRG LIDGVGLQGH INVDSPAVKE IEDTINLFST IPGLQIQITE LDISVYTSST 790 800 810 820 830 840 QQYDTLPQDI MIKQALKFKE LFEMLKRHSD RITNVTLWGL KDDYPWLSKD RSNWPLLFDS 850 860 870 880 890 900 NYQAKYNYWA IVEPSVLPVA INKGYANNAQ PRIDGIMDKE YKGTIPLSVL NDAGQDIAQV 910 920 930 940 950 960 RALWSGNELC LYVTVNDSSV DANNDRVVIF IDQDNGKLPE LKDDDFWVSI SRNGTKNQSK 970 980 990 1000 1010 1020 TGYVKDYVVL QQLNGYTMEV KLLLNNSLAI NTNIGFDIAV IDNGQQYSWN DRTNSQYFET 1030 1040 1050 1060 1070 1080 DNYGILTMAD SIKFASAQKG TPKIDAELDD AWKNAQEIVT DTKVTVTGTV YDSAYAKARM 1090 1100 1110 1120 1130 1140 MWDENCIYVY AVVYDPLLNK ANTNPWEQDS IEIFIDENNH KTPYYEDDDV QYRVSYENTQ 1150 1160 1170 1180 1190 1200 TFGTNGDAKN FITATKIIPN GYVVEVQVYM RTTKLSEGMV IGFDIQVNDA DHTGGRVGVL 1210 1220 1230 1240 1250 1260 TWNDKVGNNW RDTTKFGCLE LVAAPAQQPT TQQPSTSPST STTVTTVITP ATPAPSQQQT 1270 1280 1290 1300 1310 1320 TQQQQTQQQQ QSQQTQTTAQ QQQKTEISAT QNQAIVKLEA DKPATVALGQ DIKVVISPNA 1330 1340 1350 1360 1370 1380 VTNKNATVKV EKIEKVSPDI GLGVTIAPAV KVDVENGELV KAVQVEIKVD PISFKDDKIP 1390 1400 1410 1420 1430 1440 FAFVIDDTNK TSIVPVKKEV NKVIVNTPKE GTIIVVAAKL EDVYKDVPKT HWAYDTFKQA 1450 1460 1470 1480 1490 1500 VTSGLVVGYN DMTLRPAKNV TLAEAAVIVQ RAFEVRPKDA GKPANVPDWA ASAIKALLDN 1510 1520 1530 1540 1550 1560 EIIAEVDDAN KPLTRIEAVA IIMKVLENSG INVEPADIEF SDLYEQSSID VEYLAKAYKL 1570 1580 1590 GIVKGYPDGT FRPQNTVTRA ELLTLLFRAL NSIKK

References

[1]	"Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain Rt69B.1." Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L. Extremophiles 3:103-111(1999) [PubMed: 10356996] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Rt69B.1 EMBL AAB95325.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF036923 Genomic DNA. Translation: AAB95325.1.
PIR	T31082.
3D structure databases
HSSP	HSSP built from PDB template 1I8A based on UniProtKB Q60037.
ProteinModelPortal	O52373.
SMR	O52373. Positions 1034-1222.
ModBase	Search...
Protein family/group databases
CAZy	CBM22. Carbohydrate-Binding Module Family 22. CBM9. Carbohydrate-Binding Module Family 9. GH10. Glycoside Hydrolase Family 10.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR010502. Carb-bd_dom_fam9. IPR008960. Carb-bd_dom_fam9-like. IPR015922. Carb-bd_dom_fam9-like_subgr. IPR003305. CenC_carb-bd. IPR008979. Galactose-bd-like. IPR001000. Glyco_hydro_10. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR001119. S-layer_homology_dom. [Graphical view]
Gene3D	G3DSA:2.60.40.1190. CBD9. 2 hits. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF02018. CBM_4_9. 3 hits. PF06452. DUF1083. 2 hits. PF00331. Glyco_hydro_10. 1 hit. PF00395. SLH. 2 hits. [Graphical view]
PRINTS	PR00134. GLHYDRLASE10.
SMART	SM00633. Glyco_10. 1 hit. [Graphical view]
SUPFAM	SSF49344. CBD9-like. 2 hits. SSF49785. Gal_bind_like. 3 hits. SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS00591. GLYCOSYL_HYDROL_F10. 1 hit. PS51272. SLH. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O52373_9FIRM

Accession

Primary (citable) accession number: O52373

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 1998
Last sequence update:	June 1, 1998
Last modified:	October 19, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)