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Protein
Submitted name:

Putative RNA polymerase secondary sigma factor

Gene

sigG

Organism
Streptomyces coelicolor
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative RNA polymerase secondary sigma factorImported
Gene namesi
Name:sigGImported
OrganismiStreptomyces coelicolorImported
Taxonomic identifieri1902 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO7341.

Structurei

3D structure databases

ProteinModelPortaliO52313.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 11070Sigma70_r2InterPro annotationAdd
BLAST
Domaini121 – 17454Sigma70_r3InterPro annotationAdd
BLAST
Domaini207 – 25650Sigma70_r4InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4108N6D. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270270.
KOiK03090.
OrthoDBiEOG6TBHDX.
PhylomeDBiO52313.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014322. RNA_pol_sigma-B/F/G.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02980. SigBFG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

O52313-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVAGRTQPH PHDDAPDTAA AFERLAGLPE GPERKALRDD LIRVWLPMAE
60 70 80 90 100
RIAVRFRGRG ENLEDLYQVA ALGLVKAVDH YDPERGHAFE AYAVPTVTGE
110 120 130 140 150
IKRHFRDHMW TLHVPRRIQD LRNRVRKSAK ELAQTTPGRA PTVEEIAEHA
160 170 180 190 200
QLTTAEVRTG MEALECFSAL SLEAEMPGTD GYALGDALGG PDPAFDAVVD
210 220 230 240 250
RVAVRPCLEA LPERERTILY LRFFGGMTQS RIAQQLGISQ MHVSRLLTGC
260
FDRIREEILA EAR
Length:263
Mass (Da):29,423
Last modified:June 1, 1998 - v1
Checksum:i667B4525422663EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036131 Genomic DNA. Translation: AAC01582.1.
RefSeqiNP_631395.1. NC_003888.3.

Genome annotation databases

GeneIDi1102779.
KEGGisco:SCO7341.
PATRICi23744605. VBIStrCoe124346_7445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036131 Genomic DNA. Translation: AAC01582.1.
RefSeqiNP_631395.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO52313.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO7341.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1102779.
KEGGisco:SCO7341.
PATRICi23744605. VBIStrCoe124346_7445.

Phylogenomic databases

eggNOGiENOG4108N6D. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270270.
KOiK03090.
OrthoDBiEOG6TBHDX.
PhylomeDBiO52313.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014322. RNA_pol_sigma-B/F/G.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02980. SigBFG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A new gene, sigG, encoding a putative alternative sigma factor of Streptomyces coelicolor A3(2)."
    Kormanec J., Homerova D., Barak I., Sevcikova B.
    FEMS Microbiol. Lett. 172:153-158(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: M145Imported.

Entry informationi

Entry nameiO52313_STRCH
AccessioniPrimary (citable) accession number: O52313
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.