Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

TATA-box-binding protein D

Gene

tbpD

Organism
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
TATA-box-binding protein D
Alternative name(s):
Box A-binding protein D
Short name:
BAP D
TATA sequence-binding protein D
Short name:
TBP D
TATA-box factor D
Gene namesi
Name:tbpD
Ordered Locus Names:VNG_5163G
Encoded oniPlasmid pNRC1000 Publication
OrganismiHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Taxonomic identifieri64091 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacterium
Proteomesi
  • UP000000554 Componenti: Plasmid pNRC100

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 186186TATA-box-binding protein DPRO_0000154002Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO52018.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati10 – 86771Add
BLAST
Repeati101 – 179792Add
BLAST

Sequence similaritiesi

Belongs to the TBP family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

InParanoidiO52018.
OMAiPNVEYEP.
PhylomeDBiO52018.

Family and domain databases

CDDicd04518. TBP_archaea. 1 hit.
Gene3Di3.30.310.10. 2 hits.
HAMAPiMF_00408. TATA_bind_prot_arch. 1 hit.
InterProiIPR012295. Beta2_adaptin/TBP_C_dom.
IPR000814. TBP.
IPR033711. TBP_archaea.
[Graphical view]
PANTHERiPTHR10126. PTHR10126. 1 hit.
PfamiPF00352. TBP. 2 hits.
[Graphical view]
PRINTSiPR00686. TIFACTORIID.

Sequencei

Sequence statusi: Complete.

O52018-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLTDTIQI ENVVASTDLS QELALEQLAT DLPGAEYNPG DFPGVIYRLD
60 70 80 90 100
DPKSATLIFD SGKAVCTGAQ SVDDVHDAIS IVVEDLRDLG IDIPPSPPVH
110 120 130 140 150
VQNIVCSGSL DQDLNLNAIA IGLGLEDVEY EPEQFPGLVY RLNDPDVVVL
160 170 180
LFGSGKLVIT GGSNPDDAHH ALEIIHERLT DLGLLE
Length:186
Mass (Da):19,881
Last modified:June 1, 1998 - v1
Checksum:i4F7B9608102699F4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016485 Genomic DNA. Translation: AAC82898.1.
PIRiT08331.
RefSeqiWP_010890467.1. NC_001869.1.

Genome annotation databases

EnsemblBacteriaiAAC82898; AAC82898; AAC82898.
GeneIDi5954680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016485 Genomic DNA. Translation: AAC82898.1.
PIRiT08331.
RefSeqiWP_010890467.1. NC_001869.1.

3D structure databases

ProteinModelPortaliO52018.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC82898; AAC82898; AAC82898.
GeneIDi5954680.

Phylogenomic databases

InParanoidiO52018.
OMAiPNVEYEP.
PhylomeDBiO52018.

Family and domain databases

CDDicd04518. TBP_archaea. 1 hit.
Gene3Di3.30.310.10. 2 hits.
HAMAPiMF_00408. TATA_bind_prot_arch. 1 hit.
InterProiIPR012295. Beta2_adaptin/TBP_C_dom.
IPR000814. TBP.
IPR033711. TBP_archaea.
[Graphical view]
PANTHERiPTHR10126. PTHR10126. 1 hit.
PfamiPF00352. TBP. 2 hits.
[Graphical view]
PRINTSiPR00686. TIFACTORIID.
ProtoNetiSearch...

Entry informationi

Entry nameiTBPD_HALSA
AccessioniPrimary (citable) accession number: O52018
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2001
Last sequence update: June 1, 1998
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.