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Protein
Submitted name:

DNA repair protein

Gene

rad25

Organism
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
DNA repair proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:rad25Imported
Ordered Locus Names:VNG_6130GImported
Encoded oniPlasmid pNRC100Imported
Plasmid pNRC200Imported
OrganismiHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)Imported
Taxonomic identifieri64091 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacterium
Proteomesi
  • UP000000554 Componentsi: Plasmid pNRC100, Plasmid pNRC200

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini93 – 241149Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini331 – 469139Helicase C-terminalInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili318 – 34528Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

OMAiITHQTET.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR032438. ERCC3_RAD25_C.
IPR006935. Helicase/UvrB_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF16203. ERCC3_RAD25_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O51997-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLAFDDGTL LLEDAPNSVP YADWDDRVDE YRARALHYQD LCQWAQGPDG
60 70 80 90 100
QATLNQASHT DESLHDDARA YRDLDLTPAV AIEPRDYQQA ALAAWTDHDR
110 120 130 140 150
RGSVVLPTGS GKTFLAVQAI ADASVSTLVV VPTIDLLNQW HATLTNAFGD
160 170 180 190 200
QLPHEIGVLG GGSHNVTDIT VTTYDSAYRY INEYGDQFGL LVVDEVHHLP
210 220 230 240 250
APTYQQIPEM TIAPYRLGLT ATYERTDGEH NVLEDLIGPV VYEENVDELA
260 270 280 290 300
GEYLSEYETI HLKVDLTPEE RNQYDDEYQI YRDYLDNHDV DIWKQDGYQE
310 320 330 340 350
FLKRTSYDPD GRRALIAKQR AEEIARTAEK KLDTLDNLLK RHYNDRTIIF
360 370 380 390 400
TANNDFAYDI SQEFIVPCIT HQTQTDERTE ILERFRTGEY SMLVTSQVLD
410 420 430 440 450
EGIDVPAANV GIILSGSASK RQYAQRLGRI LRPTEDREPA RLYELITDDT
460
MEQYVSKRRR QGVTTNADS
Length:469
Mass (Da):53,360
Last modified:June 1, 1998 - v1
Checksum:iDE4C990625B4C5F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016485 Genomic DNA. Translation: AAC82877.1.
AE004438 Genomic DNA. Translation: AAG20805.1.
PIRiT08310.
RefSeqiWP_010890488.1. NC_002608.1.

Genome annotation databases

EnsemblBacteriaiAAC82877; AAC82877; AAC82877.
AAG20805; AAG20805; VNG_6130G.
GeneIDi5954583.
KEGGihal:VNG6130G.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016485 Genomic DNA. Translation: AAC82877.1.
AE004438 Genomic DNA. Translation: AAG20805.1.
PIRiT08310.
RefSeqiWP_010890488.1. NC_002608.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC82877; AAC82877; AAC82877.
AAG20805; AAG20805; VNG_6130G.
GeneIDi5954583.
KEGGihal:VNG6130G.

Phylogenomic databases

OMAiITHQTET.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR032438. ERCC3_RAD25_C.
IPR006935. Helicase/UvrB_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF16203. ERCC3_RAD25_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A plasmid-encoded gas vesicle protein gene in a halophilic archaebacterium."
    DasSarma S., Damerval T., Jones J.G., Tandeau de Marsac N.
    Mol. Microbiol. 1:365-370(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  2. "Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobium."
    Jones J.G., Hackett N.R., Halladay J.T., Scothorn D.J., Yang C.F., Ng W.L., DasSarma S.
    Nucleic Acids Res. 17:7785-7793(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  3. "Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100."
    Jones J.G., Young D.C., DasSarma S.
    Gene 102:117-122(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  4. "Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences."
    Ng W.L., Kothakota S., DasSarma S.
    J. Bacteriol. 173:3933-3933(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  5. "Genetic transformation of a halophilic archaebacterium with a gas vesicle gene cluster restores its ability to float."
    Halladay J.T., Ng W.L., DasSarma S.
    Gene 119:131-136(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  6. "Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium."
    DasSarma S.
    Experientia 49:482-486(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  7. "The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC."
    Halladay J.T., Jones J.G., Lin F., MacDonald A.B., DasSarma S.
    J. Bacteriol. 175:684-692(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  8. "Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100."
    Ng W.L., DasSarma S.
    J. Bacteriol. 175:4584-4596(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  9. "Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100."
    DasSarma S., Arora P., Lin F., Molinari E., Yin L.R.
    J. Bacteriol. 176:7646-7652(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  10. "Large deletions in class III gas vesicle-deficient mutants of Halobacterium halobium."
    Ng W.L., Arora P., DasSarma S.
    Syst. Appl. Microbiol. 16:560-568(1994)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  11. "Natural plasmids and plasmid vectors of halophiles."
    DasSarma S., DasSarma S.
    (In) Robb, F.T., Place, A.R., Sowers, K.R., Schreier, H.J. and Fleischmann, E.M. (eds.); ARCHAEA: A LABORATORY MANUAL - HALOPHILES, pp.253-255, Cold Spring Harbor Laboratory Press (1995)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  12. "Genetic analysis of gas vesicle formation in haloarchaea."
    DasSarma S., Arora P.
    FEMS Microbiol. Lett. 153:1-10(1997)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  13. "Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?"
    Ng W.V., Ciufo S.A., Smith T.M., Bumgarner R.E., Baskin D., Faust J., Hall B., Loretz C., Seto J., Slagel J., Hood L., DasSarma S.
    Genome Res. 8:1131-1141(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700922 / JCM 11081 / NRC-1Imported and NRC-1Imported.
    Plasmid: pNRC100
  14. Ng W.L., Ciufo S.A., Smith T.M., Bumgarner R.E., Loretz C., Baskin D., Faust J., Seto J., Slagel J., Hood L., DasSarma S.
    Submitted (JAN-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NRC-1Imported.
    Plasmid: pNRC100
  15. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700922 / JCM 11081 / NRC-1Imported and NRC-1Imported.
    Plasmid: pNRC100 pNRC200

Entry informationi

Entry nameiO51997_HALSA
AccessioniPrimary (citable) accession number: O51997
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: July 6, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.