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Protein

RNA polymerase sigma factor

Gene

rpoS

Organism
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

  • dissemination or transmission of symbiont from host by vector Source: CACAO
  • DNA-templated transcription, initiation Source: InterPro

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoSImported
Ordered Locus Names:BB_0771Imported
OrganismiBorrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)Imported
Taxonomic identifieri224326 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella
Proteomesi
  • UP000001807 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

PRIDEiO51712.

Expressioni

Gene expression databases

CollecTFiEXPREG_000006b0.

Interactioni

Protein-protein interaction databases

STRINGi224326.BB_0771.

Structurei

3D structure databases

ProteinModelPortaliO51712.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini69 – 82RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini235 – 261RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105DG1. Bacteria.
COG0568. LUCA.
KOiK03087.
OMAiYQRWLAE.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O51712-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIFSNEDLN IYLKSVREHK LITHEEEIKL AGQIQRGNAK AKNKMINANL
60 70 80 90 100
RLVLKIIKRY AGKGLKIEDL IQEGNLGLIR AAEKYDPNKN TKFSTYASFW
110 120 130 140 150
IKQSLQRALN TKTRLVKVPY RKENLILQIN KYLTEEEKSP KKEEIMKRFN
160 170 180 190 200
LSPAQYIKII PYLEKEYSLD KEIEGSENST LLNLYEDNSF NPEITLEQDS
210 220 230 240 250
TLKHLNYILE TKLNEKERYI IKKRYNLDNS PKKSTLKDIS TELGISSETV
260
RQIEKRVLKK LKEEIN
Length:266
Mass (Da):31,237
Last modified:June 1, 1998 - v1
Checksum:iE01081A226D06918
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000783 Genomic DNA. Translation: AAC67109.1.
PIRiB70196.
RefSeqiNP_212905.1. NC_001318.1.
WP_002557358.1. NC_001318.1.

Genome annotation databases

EnsemblBacteriaiAAC67109; AAC67109; BB_0771.
GeneIDi1195628.
KEGGibbu:BB_0771.
PATRICifig|224326.49.peg.1162.

Similar proteinsi

Entry informationi

Entry nameiO51712_BORBU
AccessioniPrimary (citable) accession number: O51712
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: October 25, 2017
This is version 124 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported