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Protein

30S ribosomal protein S18

Gene

rpsR

Organism
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18UniRule annotation
Gene namesi
Name:rpsRUniRule annotation
Ordered Locus Names:BB_0113
OrganismiBorrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Taxonomic identifieri224326 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella
Proteomesi
  • UP000001807 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001111231 – 9630S ribosomal protein S18Add BLAST96

Proteomic databases

PRIDEiO51140.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.UniRule annotation

Protein-protein interaction databases

STRINGi224326.BB_0113.

Structurei

3D structure databases

ProteinModelPortaliO51140.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S18P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VH8. Bacteria.
COG0238. LUCA.
KOiK02963.
OMAiKTRKCAF.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18. 1 hit.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O51140-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKDRDTNQR DSRFENQQDG FKKNSNFRFF KRKSCKFCDS GKHPDYKDFD
60 70 80 90
FLKKFITEQG KILPKRITGT SAKHQRRLAL EIKRARYMAL LPFVKK
Length:96
Mass (Da):11,614
Last modified:June 1, 1998 - v1
Checksum:i1F8AD244EF3520ED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000783 Genomic DNA. Translation: AAC66493.1.
PIRiA70114.
RefSeqiNP_212247.1. NC_001318.1.
WP_002556715.1. NC_001318.1.

Genome annotation databases

EnsemblBacteriaiAAC66493; AAC66493; BB_0113.
GeneIDi1194949.
KEGGibbu:BB_0113.
PATRICi20556832. VBIBorBur75917_0511.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000783 Genomic DNA. Translation: AAC66493.1.
PIRiA70114.
RefSeqiNP_212247.1. NC_001318.1.
WP_002556715.1. NC_001318.1.

3D structure databases

ProteinModelPortaliO51140.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224326.BB_0113.

Proteomic databases

PRIDEiO51140.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC66493; AAC66493; BB_0113.
GeneIDi1194949.
KEGGibbu:BB_0113.
PATRICi20556832. VBIBorBur75917_0511.

Phylogenomic databases

eggNOGiENOG4105VH8. Bacteria.
COG0238. LUCA.
KOiK02963.
OMAiKTRKCAF.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18. 1 hit.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS18_BORBU
AccessioniPrimary (citable) accession number: O51140
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: June 1, 1998
Last modified: November 2, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.