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Protein
Submitted name:

Transcriptional activator

Gene

stdR

Organism
Pseudomonas sp. VLB120
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional activatorImported
Submitted name:
Two-component response regulatorImported
Gene namesi
Name:stdRImported
ORF Names:PVLB_26552Imported
Encoded oniPlasmid pSTYImported
OrganismiPseudomonas sp. VLB120Imported
Taxonomic identifieri69328 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000017756 Componenti: Plasmid pSTY

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

SMRiO50213. Positions 4-200.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 120115Response regulatoryInterPro annotationAdd
BLAST
Domaini136 – 20166HTH luxR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation
Contains response regulatory domain.SAAS annotation

Phylogenomic databases

OrthoDBiPOG091H0LNK.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O50213-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTKPTVFVV DDDLSVREGL RNLLRSAGFE VETFDCASTF LEHRHPDQHG
60 70 80 90 100
CLVLDMRMPG MSGIELQEQL TAISDGIPIV FITAHGDIPM TVRAMKAGAI
110 120 130 140 150
EFLPKPFEEQ ALLDAIEQGL QLDAERRQAR AIQDQLEQLF SSLTGREQQV
160 170 180 190 200
LQLTIRGLMN KQIAGELGIA EVTVKVHRHN IMQKLNVRSL ANLVHLVEKY

ESFERKG
Length:207
Mass (Da):23,244
Last modified:June 1, 1998 - v1
Checksum:i19D905686A00A8BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031161 Genomic DNA. Translation: AAC23717.1.
CP003962 Genomic DNA. Translation: AGZ38047.1.
RefSeqiWP_019436614.1. NC_022739.1.

Genome annotation databases

EnsemblBacteriaiAGZ38047; AGZ38047; PVLB_26552.
KEGGipsv:PVLB_26552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031161 Genomic DNA. Translation: AAC23717.1.
CP003962 Genomic DNA. Translation: AGZ38047.1.
RefSeqiWP_019436614.1. NC_022739.1.

3D structure databases

SMRiO50213. Positions 4-200.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGZ38047; AGZ38047; PVLB_26552.
KEGGipsv:PVLB_26552.

Phylogenomic databases

OrthoDBiPOG091H0LNK.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO50213_9PSED
AccessioniPrimary (citable) accession number: O50213
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: September 7, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.