Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Hcr9-4A

Gene

Hcr9-4A

Organism
Solanum habrochaites (Wild tomato) (Lycopersicon hirsutum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Hcr9-4AImported
Gene namesi
Name:Hcr9-4AImported
OrganismiSolanum habrochaites (Wild tomato) (Lycopersicon hirsutum)Imported
Taxonomic identifieri62890 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei811 – 83525HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 865842Sequence analysisPRO_5004159522Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO50028.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini30 – 8556LRRNT_2InterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 9 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.

Sequencei

Sequence statusi: Complete.

O50028-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCVKLIFFM LYVFLFQLVP SSSLPHLCPE DQALALLQFK NMFTVNPNAS
60 70 80 90 100
DYCYDYTGVE IQSYPRTLSW NKSTDCCSWD GVDCDETTGQ VIALDLCCSK
110 120 130 140 150
LRGKFHTNSS LFQLSNLKRL DLSNNNFTGS LISPKFGEFS NLTHLVLSDS
160 170 180 190 200
SFTGLIPFEI SRLSKLHVLR ISDLNELSLG PHNFELLLKN LTQLRELNLD
210 220 230 240 250
SVNISSTIPS NFSSHLTNLW LPYTELRGVL PERVFHLSDL EFLHLSGNPQ
260 270 280 290 300
LTVRFPTTKW NSSASLMKLY VDSVNIADRI PESFSHLTSL HELDMGYTNL
310 320 330 340 350
SGPIPKPLWN LTNIESLFLD DNHLEGPIPQ LPRFEKLNDL SLGYNNLDGG
360 370 380 390 400
LEFLYSNRSW TELEILDFSS NYLTGPIPSN VSGLRNLQLL HLSSNHLNGT
410 420 430 440 450
IPSWIFSLPS LVVLDLSNNT FSGKIQEFKS KTLITVTLKQ NKLKGPIPNS
460 470 480 490 500
LLNQQSLSFL LLSHNNISGH ISSSICNLKT LISLDLGSNN LEGTIPQCVG
510 520 530 540 550
EMKENLWSLD LSNNSLSGTI NTTFSVGNFL RVISLHGNKL TGKVPRSLIN
560 570 580 590 600
CKYLTLLDLG NNMLNDTFPN WLGYLPDLKI LSLRSNKLHG LIKSSGNTNL
610 620 630 640 650
FTRLQILDLS SNGFSGNLPE SILGNLQTMK KINESTRFPE YISDPYDIFY
660 670 680 690 700
NYLTTITTKG QDYDSVRIFT SNMIINLSKN RFEGHIPSII GDLVGLRTLN
710 720 730 740 750
LSHNALEGHI PASFQNLSVL ESLDLASNKI SGEIPQQLAS LTFLEVLNLS
760 770 780 790 800
HNHLVGCIPK GKQFDSFGNS SYQGNDGLRG FPLSKLCGVD DQVTTPAELD
810 820 830 840 850
QEEEEEDSPM ISWQGVLVGY GCGLVIGLSV IYIMWSTQYP VWFSRMDLKL
860
EHIITTRMKK HKKRY
Length:865
Mass (Da):96,863
Last modified:June 1, 1998 - v1
Checksum:iC63053BDB439C94B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002235 Genomic DNA. Translation: CAA05265.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002235 Genomic DNA. Translation: CAA05265.1.

3D structure databases

ProteinModelPortaliO50028.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 9 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato."
    Parniske M., Hammond-Kosack K.E., Golstein C., Thomas C.M., Jones D.A., Harrison K., Wulff B.B., Jones J.D.
    Cell 91:821-832(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Characterisation of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences which determine recognitional specificity in Cf-4 and Cf-9."
    Thomas C.M., Jones D.A., Parniske M., Harrison K., Balint-Kurti P.J., Hatzixanthis K., Jones J.D.
    Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO50028_SOLHA
AccessioniPrimary (citable) accession number: O50028
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.