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Protein
Submitted name:

Hcr9-4E

Gene

Hcr9-4E

Organism
Solanum habrochaites (Wild tomato) (Lycopersicon hirsutum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Hcr9-4EImported
Gene namesi
Name:Hcr9-4EImported
OrganismiSolanum habrochaites (Wild tomato) (Lycopersicon hirsutum)Imported
Taxonomic identifieri62890 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei801 – 82525HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 855834Sequence analysisPRO_5004158813Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO50024.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini30 – 7647LRRNT_2InterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13516. LRR_6. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 10 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 3 hits.

Sequencei

Sequence statusi: Complete.

O50024-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCVKLIFFM LYVFLFQLVS SSSLPHLCPE DQALALLQFK NMFTINPNAS
60 70 80 90 100
NYCYDRRTLS WNKSTSCCSW DGVHCDETTG QVIELDLGCS QLQGKFHSNS
110 120 130 140 150
SLFQLSNLKR LDLSSNDFTG SPISPKFGEF SDLTHLDLSD SNFTGVIPSE
160 170 180 190 200
ISHLSKLHVL RISDQYKLSL GPHNFELLLK NLTQLRELHL ESVNISSTIP
210 220 230 240 250
SNFSFHLTNL RLSYTELRGV LPERVFHLSN LELLDLSYNP QLTVRFPTTI
260 270 280 290 300
WNSSASLVKL YLSRVNIAGN IPDSFSYLTA LHELDMVYTN LSGPIPKPLW
310 320 330 340 350
NLTNIESLDL DYNHLEGPIP QLPIFEKLKS LTLGNNNLDG GLEFLSFNRS
360 370 380 390 400
WTQLEELDFS SNSLTGPIPS NVSGLRNLQS LYLSSNNLNG SIPSWIFDLP
410 420 430 440 450
SLRSLDLSNN TFSGKIQEFK SKTLSIVTLK QNQLKGPIPN SLLNQESLQF
460 470 480 490 500
LLLSHNNISG HISSSICNLK ILMVLDLGSN NLEGTIPQCV VERNEYLSHL
510 520 530 540 550
DLSNNRLSGT INTTFSIGNS FRAISLHGNK LTGKVPRSLI NCKYLTLLDL
560 570 580 590 600
GNNQLNDTFP NWLGYLSQLK ILSLRSNKLH GPIKSSGNTN LFMRLQILDL
610 620 630 640 650
SSNGFSGNLP ERILGNLQTM KKFDENTRFP EYISDRYIYY DYLTTITTKG
660 670 680 690 700
QDYDSVRIFT FNMIINLSKN RFEGRIPSII GDLVGLRTLN LSHNVLEGHI
710 720 730 740 750
PVSLQNLSVL ESLDLSSNKI SGAIPQQLAS LTFLEVLNLS HNHLVGCIPK
760 770 780 790 800
GKQFDSFGNT SYQGNDGLRG FPLSTHCGGD DQVTTPAELD QQQEEEDSPM
810 820 830 840 850
ISWQGVLMGY GCGLVIGLSV IYIMWSTQYP AWFSRMDLKL ERIITTRMKK

HKKRY
Length:855
Mass (Da):96,062
Last modified:June 1, 1998 - v1
Checksum:i1314CE376B4E92F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002235 Genomic DNA. Translation: CAA05269.1.
PIRiT07015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002235 Genomic DNA. Translation: CAA05269.1.
PIRiT07015.

3D structure databases

ProteinModelPortaliO50024.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13516. LRR_6. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 10 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 3 hits.
ProtoNetiSearch...

Publicationsi

  1. "Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato."
    Parniske M., Hammond-Kosack K.E., Golstein C., Thomas C.M., Jones D.A., Harrison K., Wulff B.B., Jones J.D.
    Cell 91:821-832(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Characterisation of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences which determine recognitional specificity in Cf-4 and Cf-9."
    Thomas C.M., Jones D.A., Parniske M., Harrison K., Balint-Kurti P.J., Hatzixanthis K., Jones J.D.
    Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Identification and Ds-tagged isolation of a new gene at the Cf-4 locus of tomato involved in disease resistance to Cladosporium fulvum race 5."
    Takken F.L., Schipper D., Nijkamp H.J., Hille J.
    Plant J. 14:401-411(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO50024_SOLHA
AccessioniPrimary (citable) accession number: O50024
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.