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Protein
Submitted name:

Hcr9-9E

Gene

Hcr9-9E

Organism
Solanum pimpinellifolium (Currant tomato) (Lycopersicon pimpinellifolium)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Hcr9-9EImported
Gene namesi
Name:Hcr9-9EImported
OrganismiSolanum pimpinellifolium (Currant tomato) (Lycopersicon pimpinellifolium)Imported
Taxonomic identifieri4084 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei808 – 832HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_500415900722 – 862Sequence analysisAdd BLAST841

Structurei

3D structure databases

ProteinModelPortaliO50020.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 86LRRNT_2InterPro annotationAdd BLAST57

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13516. LRR_6. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 3 hits.
PROSITEiPS51450. LRR. 16 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O50020-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDCLELVFLM LYTFLCQLAL SSSLPHLCPE DQALALLQFK NMFTVNPNDS
60 70 80 90 100
DYCYDISTGL DIQSYPRTLS WNNRTSCCSW DGVHCDETTG QVIELDLSCS
110 120 130 140 150
QLQGTFHSNS SLFQLSNLKR LDLSFNNFTG SLISPKLGEF SSLTHLDLSH
160 170 180 190 200
SSFTGLIPSE ISHLSKLHVL RIGDLNELSL GPHNFELLLE NLTQLRELNL
210 220 230 240 250
NSVNISSTIP SNFSSHLAIL TLYDTGLRGL LPERVFHLSD LEFLDLSYNP
260 270 280 290 300
QLTVRFPTTK WNSSASLMKL YVHSVNIADR IPESFSHLTS LHELDMGYTN
310 320 330 340 350
LSGPIPKPLW NLTNIESLDL DYNHLEGPIP QLPRFEKLKD LSLRNNNFDG
360 370 380 390 400
GLEFLSFNRS WTQLEWLDFS SNSLTGPIPS NVSGLQNLEW LYLSSNNLNG
410 420 430 440 450
SIPSWIFSLP SLIELDLSNN TFSGKIQEFK SKTLSVVSLQ QNQLEGPIPK
460 470 480 490 500
SLLNQSLFYL LLSHNNISGR ISSSICNLKM LILLDLGSNN LEGTIPQCVG
510 520 530 540 550
EMKENLWSLD LSNNSLSGTI NTTFSIGNSF RAISLHGNKL TGKVPRSLIN
560 570 580 590 600
CKYLTLLDLG NNQLNDTFPN WLGYLSQLKI LSLRSNKLHG PIKSSGNTNL
610 620 630 640 650
FTRLQILDLS SNGFSGNLPE SILGNLQAMK KIDESTRTPE YISDIYYNYL
660 670 680 690 700
TTITTKGQDY DFVRILDSNM IINLSKNRFE GHIPSIIGDL VGLRTLNLSH
710 720 730 740 750
NALEGHIPAS FQNLSVLESL DLSFNKISGE IPQQLASLTF LEFLNLSHNH
760 770 780 790 800
LVGCIPKGKQ FDTFLNSSYQ GNDGLRGFPL SIHCGGDDQL TTPAELDQQQ
810 820 830 840 850
EEEDSSMISW QGVLVGYGCG LVIGLSVIYI MWSTQYPAWF SRMDLKLERI
860
ITTRMKKHKK RY
Length:862
Mass (Da):96,660
Last modified:June 1, 1998 - v1
Checksum:iD75F775BD9CA5440
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002236 Genomic DNA. Translation: CAA05276.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002236 Genomic DNA. Translation: CAA05276.1.

3D structure databases

ProteinModelPortaliO50020.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF13516. LRR_6. 1 hit.
PF13855. LRR_8. 3 hits.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 3 hits.
PROSITEiPS51450. LRR. 16 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO50020_SOLPI
AccessioniPrimary (citable) accession number: O50020
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.