Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Sig1 protein

Gene

Sig1

Organism
Sinapis alba (White mustard) (Brassica hirta)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sig1 proteinImported
Gene namesi
Name:Sig1Imported
OrganismiSinapis alba (White mustard) (Brassica hirta)Imported
Taxonomic identifieri3728 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeBrassiceaeSinapis

Interactioni

Protein-protein interaction databases

IntActiO49935. 1 interaction.
MINTiMINT-8294375.

Structurei

3D structure databases

ProteinModelPortaliO49935.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini266 – 27914RNA_pol_sigma70InterPro annotationAdd
BLAST

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O49935-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATTAVIGLN AGKRLLSSSF YYSDVTEKFL SVNDLCSSQY HTRSGITAKK
60 70 80 90 100
TSSSSSSNYS PSFPSSSRQT QSAKALKESV ASSVQPWLPP GSDQELEEDD
110 120 130 140 150
IDHSVEALLL LQRSMLEKQW NLSFEKTRKK VPVTCSGISA RQRRIGAKKK
160 170 180 190 200
TNVKAVSEVN FQNNLVKGYV KGVISDHVLS HAEVVRLSKK IKSGLRLDEH
210 220 230 240 250
KSRLTDRLGC EPSDEQLAMS LKISRAELQA WLMECHLARE KLAMSNVRLV
260 270 280 290 300
MSIAQRYDNM GAEMSDLVQG GLIGLLRGIE KFDSSKGFRI STYVYWWIRQ
310 320 330 340 350
GVSRALVDNS RTLRLPTHLH ERLGLIRNAK LRLQEKGITP SIDRIAESLN
360 370 380 390 400
MSQKKVRNAT EAVSKIFSLD RDAFPSLNGL PGETHHSYIA DNRLENNPWH
410 420 430 440 450
GYDALALKDE VSKLISVTLG EREREIIRLY YGLDKECLTW EDISQRIGLS
460 470 480
RERVRQVGLV ALEKLKHAAR KRKMEAMILK N
Length:481
Mass (Da):54,214
Last modified:June 1, 1998 - v1
Checksum:iAE15AF90DFD3AF20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y15899 mRNA. Translation: CAA75859.1.
PIRiT10470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y15899 mRNA. Translation: CAA75859.1.
PIRiT10470.

3D structure databases

ProteinModelPortaliO49935.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO49935. 1 interaction.
MINTiMINT-8294375.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba)."
    Kestermann M., Neukirchen S., Kloppstech K., Link G.
    Nucleic Acids Res. 26:2747-2753(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: CotyledonsImported.

Entry informationi

Entry nameiO49935_SINAL
AccessioniPrimary (citable) accession number: O49935
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: April 13, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.