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O49549 (O49549_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:F7J7.10 EMBL CAA17526.1
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length1331 AA.
Sequence statusFragment.
Protein existencePredicted

Ontologies

Keywords
   DomainZinc-finger RuleBase RU000353
   LigandMetal-binding
Zinc
Gene Ontology (GO)
   Molecular_functionzinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAA17526.1

Sequences

Sequence LengthMass (Da)Tools
O49549 [UniParc].

Last modified November 1, 1998. Version 2.
Checksum: 1FD980FA6DB4B08D

FASTA1,331148,109
        10         20         30         40         50         60 
IKPDGFTIVS LLSACAKIGA LTLGKRVHVY MIKVGLTRNL HSSNVLLDLY ARCGRVEEAK 

        70         80         90        100        110        120 
TLFDEMVDKN SVSWTSLIVG LAVNGFGKEA IELFKYMEST EGLLPCEITF VGILYACSHC 

       130        140        150        160        170        180 
GMVKEGFEYF RRMREEYKIE PRIEHFGCMV DLLARAGQVK KAYEYIKSMP MQPNVVIWRT 

       190        200        210        220        230        240 
LLGACTVHGD SDLAEFARIQ ILQLEPNHSG DYVLLSNMYA SEQRWSDVQK IRKQMLRDGV 

       250        260        270        280        290        300 
KKVPGHSLVE VGNRVHEFLM GDKSHPQSDA IYAKLKEMTG RLRSEGYVPQ ISNVYVDVEE 

       310        320        330        340        350        360 
EEKENAVVYH SEKIAIAFML ISTPERSPIT VVKNLRVCAD CHLAIKLVSK VYNREIVVRD 

       370        380        390        400        410        420 
RSRSKMADTS HLERMGRELK CPICLSLYNS AVSLSCNHVF CNACIVKSMK MDATCPVCKI 

       430        440        450        460        470        480 
PYHRREIRGA PHMDSLVSIY KNMEDASGIK LFVSQNNPSP SDKEKQVRDA SVEKASDKNR 

       490        500        510        520        530        540 
QGSRKGRASK RNEYGKTKEI DVDAPGPIVM KPSSQTKKRV QLLQNLSAES LTKPTESVET 

       550        560        570        580        590        600 
AEKPKDYTEN TVIRLDEHPS LNKEGNLSPF FWLRDEDDGE NSSQRTESDQ LLGTTPVNVP 

       610        620        630        640        650        660 
SFSDLMDSDH ESPSKEDEQQ KPNPGDMFDS EMFEWTQRPC SPEILPSPVK AKVLGRDEID 

       670        680        690        700        710        720 
LTQKKLPKVK VASSKCKNRK AGSARNTVAR RSIGVSQEDN MESSAAATIS EQQDSRGTSG 

       730        740        750        760        770        780 
TIIRNDVNTD ENVKAKRATR SKAQSTRVQS DLNVSNEADG KQGTKRKRSS IKSSPAHPIA 

       790        800        810        820        830        840 
GPNELSLGTE IVGKGDQDQA HGPSDTHPEK RSPTEKPSLK KRGRKSNASS SLKDLSGKTQ 

       850        860        870        880        890        900 
KKTSEKKLKL DSHMISSKAT QPHGNGILTA GLNQGGDKQD SRNNRKSTVG KDDHTMQVIE 

       910        920        930        940        950        960 
KCSTINKSSS GGSAHLRRCN GSLTKKFTCA FCQCSEDTEA SGEMTHYYRG EPVSADFNGG 

       970        980        990       1000       1010       1020 
SKVIHVHKNC AEWAPNVYFN DLTIVNLDVE LTRSRRISCS CCGLKGAALG CYNKSCKNSF 

      1030       1040       1050       1060       1070       1080 
HVTCAKLIPE CRWDNVSVAY IVEALYSPLH SSFNTFSYQQ VKFVMLCPLD ASIKLPCEEA 

      1090       1100       1110       1120       1130       1140 
NSKDRKCKRT PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE 

      1150       1160       1170       1180       1190       1200 
FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID WIKACMKNTK 

      1210       1220       1230       1240       1250       1260 
YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA 

      1270       1280       1290       1300       1310       1320 
AGGTILRRRP VSSDDNEAST IVVFSVEPSK KKTLTQRRSD AEALAKSARA RAASSSWVLD 

      1330 
SIAGCQILVL I 

« Hide

References

[1]"Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
EU, CSHL and WU Arabidopsis Sequencing Project
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B. expand/collapse author list , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL021960 Genomic DNA. Translation: CAA17526.1.
PIRT04938.

3D structure databases

ProteinModelPortalO49549.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEO49549.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Gene expression databases

GenevestigatorO49549.

Family and domain databases

Gene3D3.30.40.10. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR002885. Pentatricopeptide_repeat.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamPF00533. BRCT. 2 hits.
PF01535. PPR. 4 hits.
PF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
SM00184. RING. 1 hit.
[Graphical view]
SUPFAMSSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00756. PPR. 2 hits.
PROSITEPS50172. BRCT. 2 hits.
PS51375. PPR. 6 hits.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO49549_ARATH
AccessionPrimary (citable) accession number: O49549
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: November 1, 1998
Last modified: April 16, 2014
This is version 86 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)