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Protein

Ras-related protein RABA1e

Gene

RABA1E

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi20 – 27GTPBy similarity8
Nucleotide bindingi68 – 72GTPBy similarity5
Nucleotide bindingi126 – 129GTPBy similarity4
Nucleotide bindingi156 – 157GTPBy similarity2

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport
LigandGTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABA1e
Short name:
AtRABA1e
Gene namesi
Name:RABA1E
Ordered Locus Names:At4g18430
ORF Names:F28J12.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G18430.
TAIRilocus:2124593. AT4G18430.

Subcellular locationi

GO - Cellular componenti

  • plasma membrane Source: TAIR

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00004073362 – 217Ras-related protein RABA1eAdd BLAST216

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi214S-geranylgeranyl cysteineBy similarity1
Lipidationi215S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiO49513.
PRIDEiO49513.

PTM databases

iPTMnetiO49513.

Expressioni

Gene expression databases

ExpressionAtlasiO49513. baseline and differential.
GenevisibleiO49513. AT.

Interactioni

Protein-protein interaction databases

BioGridi12867. 16 interactors.
STRINGi3702.AT4G18430.1.

Structurei

3D structure databases

ProteinModelPortaliO49513.
SMRiO49513.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi42 – 50Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0087. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiO49513.
OMAiESIYFME.
OrthoDBiEOG09360LER.
PhylomeDBiO49513.

Family and domain databases

InterProiView protein in InterPro
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
PfamiView protein in Pfam
PF00071. Ras. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiView protein in PROSITE
PS51419. RAB. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O49513-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAYRADDDY DYLFKLVLIG DSGVGKSNLL SRFTRNEFSI ESKSTIGVEF
60 70 80 90 100
ATRSVHVDEK IIKAQLWDTA GQERYRAITS AYYRGAVGAL LVYDITRHIT
110 120 130 140 150
FENVERWLKE LRDHTDANVV IMLVGNKADL RHLRAVPTEE ARSFSERENM
160 170 180 190 200
FFMETSALDA TNVEQAFTHV LTQIYRVMSR KALDGTGDPM SLPKGQTIDI
210
GNKDDVTAVK SSGCCSG
Length:217
Mass (Da):24,330
Last modified:June 1, 1998 - v1
Checksum:iA7839FF9F56CE467
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL021710 Genomic DNA. Translation: CAA16723.1.
AL161548 Genomic DNA. Translation: CAB78845.1.
CP002687 Genomic DNA. Translation: AEE84045.1.
BT010933 mRNA. Translation: AAR24711.1.
BT011645 mRNA. Translation: AAS47651.1.
PIRiT04539.
RefSeqiNP_193578.1. NM_117956.3.
UniGeneiAt.27918.

Genome annotation databases

EnsemblPlantsiAT4G18430.1; AT4G18430.1; AT4G18430.
GeneIDi827574.
GrameneiAT4G18430.1; AT4G18430.1; AT4G18430.
KEGGiath:AT4G18430.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRAA1E_ARATH
AccessioniPrimary (citable) accession number: O49513
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: June 1, 1998
Last modified: June 7, 2017
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families