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Protein
Submitted name:

TIR-NBS-LRR class disease resistance protein

Gene

F24J7.90

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • defense response signaling pathway, resistance gene-dependent Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
TIR-NBS-LRR class disease resistance proteinImported
Submitted name:
TMV resistance protein N-likeImported
Gene namesi
Name:F24J7.90Imported
Ordered Locus Names:At4g19530Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G19530.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G19530.1.

Structurei

3D structure databases

SMRiO49471. Positions 14-177, 230-255, 631-920.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini13 – 148136TIRInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili198 – 22528Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Leucine-rich repeatSAAS annotation, RepeatSAAS annotation

Phylogenomic databases

HOGENOMiHOG000064702.
OMAiMIYISDS.
PhylomeDBiO49471.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
3.40.50.300. 1 hit.
3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 1 hit.
PF01582. TIR. 1 hit.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50104. TIR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O49471-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATSSSVVSS VPQQHQVFLN FRGDELRNNF VSHLDKALRG KQINVFIDEA
60 70 80 90 100
VEKGENLDNL FKEIEKSRIA LAIISQKYTE SKWCLNELVK MKELEGKLVT
110 120 130 140 150
IPIFYNVEPA TVRYQKEAFG AALTKTQEND SDGQMKKWKE ALTYVSLLVG
160 170 180 190 200
FPFNSKSKEK ETTLIDKIVD AVLQKLSKIS SEESTSGSVD QGRGEEVEEA
210 220 230 240 250
KADKISGLNQ RLKELEEKVA ITGDKRDETR IVEVVGMPGI GKSTLLKAFY
260 270 280 290 300
ETWKTRFLSS ALLQNISELV KAMGLGRLTG MLLKELLPDE NIDEETYEPY
310 320 330 340 350
KEKLLKNTVF IVLDGISDET HIQKLLKDHR KWAKKGSKIV IARRAVTRDL
360 370 380 390 400
LHEDSMVRYT YFVPLLSHRD GLNHFCHYAF RHFAAHQNNK EAFMKESKEF
410 420 430 440 450
VRYARGHPLI LKLLGEELRE KSLSYWEEKL KSLPKSLSQN IRDRVLQVTY
460 470 480 490 500
DELSQVQKDA FLDIACFRSH DLVYVKSLLD SSGPAFSKAT VTIDALKDMF
510 520 530 540 550
MIYISDSRVE MHDLLYTFAM ELGPEARDDD GRGRHRIWHH HNQDNKGRLN
560 570 580 590 600
RLLKRPGGST SVRSFFLDMY VMKTDVTLGT DYLKNMRNLR YLKFYSSHCP
610 620 630 640 650
QECTPKENIH IPGELELPLE EVRCLHWLNF PKDELPQDFI PKNLVDLKLP
660 670 680 690 700
YSKIRQIWRE EKDAPKLRWV DLNHSSKLEN LSGLSQALNL ERLNLEGCTA
710 720 730 740 750
LKTLLLGPEN MASLVFLNLK GCTGLESLPK INLRSLKTLI LSNCSNLEEF
760 770 780 790 800
WVISETLYTL YLDGTAIKTL PQDMVKLTSL VKLYMKDCEM LVKLPEEFDK
810 820 830 840 850
LKVLQELVCS GCKRLSSLPD VMKNMQCLQI LLLDGTAITK IPHISSLERL
860 870 880 890 900
CLSRNEKISC LSNDIRLLSQ LKWLDLKYCT KLVSIPELPT NLQCLDANGC
910 920 930 940 950
ESLTTVANPL ATHLPTEQIH STFIFTNCDK LDRTAKEGFV PEALFSTCFP
960 970 980 990 1000
GCEVPSWFCH EAVGSVLKLN LLPHWNENRF VGIALCAVVG SLPNCQEQTN
1010 1020 1030 1040 1050
SCSVTCTFNI ASKDSKKGDP YKISFDRLVG RWNKHGNKLD KKGNKLKKTE
1060 1070 1080 1090 1100
SDHVFICYTR CSNSIKCLQD QHSGTCTPTE AFLEFGVTDK ESRLEVLKCG
1110 1120 1130 1140 1150
LRLVYASDEP QKTNSDMDLS LSSSDSTPTR NGSSNTTTSS GSVSTNTIRE
1160
EDSNILHEAQ SQNGRGL
Length:1,167
Mass (Da):132,506
Last modified:June 1, 1998 - v1
Checksum:i754C23DBBC953D5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE84195.1.
AL021768 Genomic DNA. Translation: CAA16930.1.
AL161551 Genomic DNA. Translation: CAB78955.1.
PIRiT06146.
RefSeqiNP_193688.1. NM_118073.2.
UniGeneiAt.32809.

Genome annotation databases

EnsemblPlantsiAT4G19530.1; AT4G19530.1; AT4G19530.
GeneIDi827695.
GrameneiAT4G19530.1; AT4G19530.1; AT4G19530.
KEGGiath:AT4G19530.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE84195.1.
AL021768 Genomic DNA. Translation: CAA16930.1.
AL161551 Genomic DNA. Translation: CAB78955.1.
PIRiT06146.
RefSeqiNP_193688.1. NM_118073.2.
UniGeneiAt.32809.

3D structure databases

SMRiO49471. Positions 14-177, 230-255, 631-920.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G19530.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G19530.1; AT4G19530.1; AT4G19530.
GeneIDi827695.
GrameneiAT4G19530.1; AT4G19530.1; AT4G19530.
KEGGiath:AT4G19530.

Organism-specific databases

TAIRiAT4G19530.

Phylogenomic databases

HOGENOMiHOG000064702.
OMAiMIYISDS.
PhylomeDBiO49471.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
3.40.50.300. 1 hit.
3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 1 hit.
PF01582. TIR. 1 hit.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS50104. TIR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Bevan M., Vitale D., Liguori R., Argiriou A., De Simone V., Bancroft I., Mewes H.W., Mayer K.F.X., Lemcke K., Schueller C.
    Submitted (FEB-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    EU, CSHL and WU Arabidopsis Sequencing Project
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. EU Arabidopsis sequencing project
    Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. Vitale D., Liguori R., Argiriou A., De Simone V., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. TAIR10
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO49471_ARATH
AccessioniPrimary (citable) accession number: O49471
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: April 13, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.