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Protein
Submitted name:

Putative uncharacterized protein AT4g18900

Gene

At4g18900

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein AT4g18900Imported
Gene namesi
Ordered Locus Names:At4g18900Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini214 – 29986WD_REPEATS_REGIONInterPro annotationAdd
BLAST
Domaini766 – 83368WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili468 – 49528Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, RepeatUniRule annotation

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 4 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O49405-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRADELPSKE EIEMHKDSCK YFSNDTEEEE TEDEEENGEV AHAKAVAEEF
60 70 80 90 100
GKSSKSKNVS SSMELDDEVA EGLKELDMDN YDEEDDENLK TQFMLSLCTT
110 120 130 140 150
KLDFPLLCLD SGIEIFSSGR GDLYYKSNEM DPYLKRNDDH DDDSDDDPPI
160 170 180 190 200
LPTDLVIVCA MTDDKEANRL DVWNFLAVGS DGTPTIEIWD LDAWFDMLPC
210 220 230 240 250
VQLGGQNKEG NYKQGSHTRS VLGLAWNKEF RNILASASAD KKVKVWDVAT
260 270 280 290 300
GTCKITMEHH TKEVQAVAWN HYAPEVLLSG SFDQTVVLVN VLFHGLFHKD
310 320 330 340 350
GRQPSHSGFK WSVMSDVESL AWDPHSEHSF VMELSRALMY VKPPFQPLNQ
360 370 380 390 400
IQASLLMDMT KQLLPSHTTF RHLIAAILTL GKKKVPQKQT NLQLLNPKPT
410 420 430 440 450
KVLTLFVAHL RSSLSIKFVP RKLGPVSKRK MITAVSWIPK GNLKAVPDVA
460 470 480 490 500
EPPSKEELKE LIESGAFARN VEGSNEDEEE EIEEDGEEIS EVDHAKAVAE
510 520 530 540 550
ALGKSSKSKA VSSSMEVDEV SQGLKELDMD NYDEEDDGTF SWPFGVCSAI
560 570 580 590 600
LQVIILISRD KIELFSSGMG DLYYPSNEMD PYLKDVDDED DEEDIDDTTV
610 620 630 640 650
KPTDSVIICA RNEDDVSHLE VYLYEESSGS PNMYVHHHII IPEFPLCTAW
660 670 680 690 700
LDCPLKGGEK GNFVAIGSKD TPTIEIWDLD VRDEVLPCIQ LGGIEEMIVS
710 720 730 740 750
KKKKSKKQKP VCASNSSISS SSMASSNSKK VAILSQYLVL LGTRSFGMSK
760 770 780 790 800
LTSVSDFLLI CLDKRNILAS ASADKKVKVW DVATGTCKIT MEHHTKEVQA
810 820 830 840 850
VAWNHYAPEV LLSGSFDQTV VMKDGRQPSH SGFKWSVMSD VESLAWDPHC
860 870 880 890 900
EHSFVVHDTY LFLQIDKSVV SLEDGTVKGF DIRAAQSGSD SDLNPTYTIQ
910 920 930 940 950
AHAQDRGVSS ISYNISTPNG AVFSISFAVD NPFLLAIGGS KGELHVWDTL
960
LDANVARKYG SNRS
Length:964
Mass (Da):107,229
Last modified:June 1, 1998 - v1
Checksum:i618C27677D8851E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL021711 Genomic DNA. Translation: CAA16747.1.
AL161549 Genomic DNA. Translation: CAB78892.1.
PIRiT05027.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL021711 Genomic DNA. Translation: CAA16747.1.
AL161549 Genomic DNA. Translation: CAB78892.1.
PIRiT05027.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 4 hits.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Bevan M., Pohl T., Weizenegger T., Bancroft I., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (FEB-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Pohl T., Weizenegger T., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO49405_ARATH
AccessioniPrimary (citable) accession number: O49405
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: July 6, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.