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Protein

Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial

Gene

PCMP-E5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial
Gene namesi
Name:PCMP-E5
Ordered Locus Names:At1g77010
ORF Names:F22K20.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G77010.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 64MitochondrionSequence analysisAdd BLAST64
ChainiPRO_000034286865 – 695Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrialAdd BLAST631

Proteomic databases

PaxDbiO49287.
PRIDEiO49287.

PTM databases

iPTMnetiO49287.

Expressioni

Gene expression databases

GenevisibleiO49287. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G77010.1.

Structurei

3D structure databases

ProteinModelPortaliO49287.
SMRiO49287.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati61 – 91PPR 1Add BLAST31
Repeati92 – 122PPR 2Add BLAST31
Repeati123 – 157PPR 3Add BLAST35
Repeati159 – 184PPR 4Add BLAST26
Repeati186 – 220PPR 5Add BLAST35
Repeati221 – 251PPR 6Add BLAST31
Repeati252 – 282PPR 7Add BLAST31
Repeati283 – 313PPR 8Add BLAST31
Repeati317 – 351PPR 9Add BLAST35
Repeati352 – 382PPR 10Add BLAST31
Repeati383 – 417PPR 11Add BLAST35
Repeati418 – 448PPR 12Add BLAST31
Repeati449 – 483PPR 13Add BLAST35
Repeati484 – 514PPR 14Add BLAST31
Repeati515 – 549PPR 15Add BLAST35
Repeati550 – 585PPR 16Add BLAST36
Repeati586 – 616PPR 17Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni621 – 695Type E motif; degenerateAdd BLAST75

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 17 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000083580.
InParanoidiO49287.
OMAiSPWNDPF.
OrthoDBiEOG093603SX.
PhylomeDBiO49287.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 11 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 19 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O49287-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILKYNSSYR FYLSSSFLQA MEVDCRRYYV RLLQSCSSRN RETLWRQTNG
60 70 80 90 100
LLLKKGFLSS IVIVANHLLQ MYSRSGKMGI ARNLFDEMPD RNYFSWNTMI
110 120 130 140 150
EGYMNSGEKG TSLRFFDMMP ERDGYSWNVV VSGFAKAGEL SVARRLFNAM
160 170 180 190 200
PEKDVVTLNS LLHGYILNGY AEEALRLFKE LNFSADAITL TTVLKACAEL
210 220 230 240 250
EALKCGKQIH AQILIGGVEC DSKMNSSLVN VYAKCGDLRM ASYMLEQIRE
260 270 280 290 300
PDDHSLSALI SGYANCGRVN ESRGLFDRKS NRCVILWNSM ISGYIANNMK
310 320 330 340 350
MEALVLFNEM RNETREDSRT LAAVINACIG LGFLETGKQM HCHACKFGLI
360 370 380 390 400
DDIVVASTLL DMYSKCGSPM EACKLFSEVE SYDTILLNSM IKVYFSCGRI
410 420 430 440 450
DDAKRVFERI ENKSLISWNS MTNGFSQNGC TVETLEYFHQ MHKLDLPTDE
460 470 480 490 500
VSLSSVISAC ASISSLELGE QVFARATIVG LDSDQVVSSS LIDLYCKCGF
510 520 530 540 550
VEHGRRVFDT MVKSDEVPWN SMISGYATNG QGFEAIDLFK KMSVAGIRPT
560 570 580 590 600
QITFMVVLTA CNYCGLVEEG RKLFESMKVD HGFVPDKEHF SCMVDLLARA
610 620 630 640 650
GYVEEAINLV EEMPFDVDGS MWSSILRGCV ANGYKAMGKK AAEKIIELEP
660 670 680 690
ENSVAYVQLS AIFATSGDWE SSALVRKLMR ENNVTKNPGS SWTDC
Length:695
Mass (Da):77,874
Last modified:June 1, 1998 - v1
Checksum:i627BD46DBED4969F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002291 Genomic DNA. Translation: AAC00623.1.
CP002684 Genomic DNA. Translation: AEE35925.1.
PIRiB96799.
RefSeqiNP_177827.1. NM_106352.2.

Genome annotation databases

EnsemblPlantsiAT1G77010.1; AT1G77010.1; AT1G77010.
GeneIDi844037.
GrameneiAT1G77010.1; AT1G77010.1; AT1G77010.
KEGGiath:AT1G77010.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002291 Genomic DNA. Translation: AAC00623.1.
CP002684 Genomic DNA. Translation: AEE35925.1.
PIRiB96799.
RefSeqiNP_177827.1. NM_106352.2.

3D structure databases

ProteinModelPortaliO49287.
SMRiO49287.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G77010.1.

PTM databases

iPTMnetiO49287.

Proteomic databases

PaxDbiO49287.
PRIDEiO49287.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G77010.1; AT1G77010.1; AT1G77010.
GeneIDi844037.
GrameneiAT1G77010.1; AT1G77010.1; AT1G77010.
KEGGiath:AT1G77010.

Organism-specific databases

TAIRiAT1G77010.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000083580.
InParanoidiO49287.
OMAiSPWNDPF.
OrthoDBiEOG093603SX.
PhylomeDBiO49287.

Miscellaneous databases

PROiO49287.

Gene expression databases

GenevisibleiO49287. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 11 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 19 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP127_ARATH
AccessioniPrimary (citable) accession number: O49287
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 1998
Last modified: November 30, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.