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Protein

Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial

Gene

PCMP-E5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial
Gene namesi
Name:PCMP-E5
Ordered Locus Names:At1g77010
ORF Names:F22K20.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G77010.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 6464MitochondrionSequence analysisAdd
BLAST
Chaini65 – 695631Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrialPRO_0000342868Add
BLAST

Proteomic databases

PaxDbiO49287.
PRIDEiO49287.

PTM databases

iPTMnetiO49287.

Expressioni

Gene expression databases

GenevisibleiO49287. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G77010.1.

Structurei

3D structure databases

ProteinModelPortaliO49287.
SMRiO49287. Positions 56-676.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati61 – 9131PPR 1Add
BLAST
Repeati92 – 12231PPR 2Add
BLAST
Repeati123 – 15735PPR 3Add
BLAST
Repeati159 – 18426PPR 4Add
BLAST
Repeati186 – 22035PPR 5Add
BLAST
Repeati221 – 25131PPR 6Add
BLAST
Repeati252 – 28231PPR 7Add
BLAST
Repeati283 – 31331PPR 8Add
BLAST
Repeati317 – 35135PPR 9Add
BLAST
Repeati352 – 38231PPR 10Add
BLAST
Repeati383 – 41735PPR 11Add
BLAST
Repeati418 – 44831PPR 12Add
BLAST
Repeati449 – 48335PPR 13Add
BLAST
Repeati484 – 51431PPR 14Add
BLAST
Repeati515 – 54935PPR 15Add
BLAST
Repeati550 – 58536PPR 16Add
BLAST
Repeati586 – 61631PPR 17Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni621 – 69575Type E motif; degenerateAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 17 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000083580.
InParanoidiO49287.
OMAiEVLWNSM.
PhylomeDBiO49287.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 11 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 19 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O49287-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILKYNSSYR FYLSSSFLQA MEVDCRRYYV RLLQSCSSRN RETLWRQTNG
60 70 80 90 100
LLLKKGFLSS IVIVANHLLQ MYSRSGKMGI ARNLFDEMPD RNYFSWNTMI
110 120 130 140 150
EGYMNSGEKG TSLRFFDMMP ERDGYSWNVV VSGFAKAGEL SVARRLFNAM
160 170 180 190 200
PEKDVVTLNS LLHGYILNGY AEEALRLFKE LNFSADAITL TTVLKACAEL
210 220 230 240 250
EALKCGKQIH AQILIGGVEC DSKMNSSLVN VYAKCGDLRM ASYMLEQIRE
260 270 280 290 300
PDDHSLSALI SGYANCGRVN ESRGLFDRKS NRCVILWNSM ISGYIANNMK
310 320 330 340 350
MEALVLFNEM RNETREDSRT LAAVINACIG LGFLETGKQM HCHACKFGLI
360 370 380 390 400
DDIVVASTLL DMYSKCGSPM EACKLFSEVE SYDTILLNSM IKVYFSCGRI
410 420 430 440 450
DDAKRVFERI ENKSLISWNS MTNGFSQNGC TVETLEYFHQ MHKLDLPTDE
460 470 480 490 500
VSLSSVISAC ASISSLELGE QVFARATIVG LDSDQVVSSS LIDLYCKCGF
510 520 530 540 550
VEHGRRVFDT MVKSDEVPWN SMISGYATNG QGFEAIDLFK KMSVAGIRPT
560 570 580 590 600
QITFMVVLTA CNYCGLVEEG RKLFESMKVD HGFVPDKEHF SCMVDLLARA
610 620 630 640 650
GYVEEAINLV EEMPFDVDGS MWSSILRGCV ANGYKAMGKK AAEKIIELEP
660 670 680 690
ENSVAYVQLS AIFATSGDWE SSALVRKLMR ENNVTKNPGS SWTDC
Length:695
Mass (Da):77,874
Last modified:June 1, 1998 - v1
Checksum:i627BD46DBED4969F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002291 Genomic DNA. Translation: AAC00623.1.
CP002684 Genomic DNA. Translation: AEE35925.1.
PIRiB96799.
RefSeqiNP_177827.1. NM_106352.1.
UniGeneiAt.52541.

Genome annotation databases

EnsemblPlantsiAT1G77010.1; AT1G77010.1; AT1G77010.
GeneIDi844037.
GrameneiAT1G77010.1; AT1G77010.1; AT1G77010.
KEGGiath:AT1G77010.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002291 Genomic DNA. Translation: AAC00623.1.
CP002684 Genomic DNA. Translation: AEE35925.1.
PIRiB96799.
RefSeqiNP_177827.1. NM_106352.1.
UniGeneiAt.52541.

3D structure databases

ProteinModelPortaliO49287.
SMRiO49287. Positions 56-676.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G77010.1.

PTM databases

iPTMnetiO49287.

Proteomic databases

PaxDbiO49287.
PRIDEiO49287.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G77010.1; AT1G77010.1; AT1G77010.
GeneIDi844037.
GrameneiAT1G77010.1; AT1G77010.1; AT1G77010.
KEGGiath:AT1G77010.

Organism-specific databases

TAIRiAT1G77010.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000083580.
InParanoidiO49287.
OMAiEVLWNSM.
PhylomeDBiO49287.

Miscellaneous databases

PROiO49287.

Gene expression databases

GenevisibleiO49287. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 11 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 19 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  4. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP127_ARATH
AccessioniPrimary (citable) accession number: O49287
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 1998
Last modified: June 8, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.