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Protein

Tubulin gamma-2 chain

Gene

TUBG2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome, suggesting that it is involved in the minus-end nucleation of microtubule assembly.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi142 – 1487GTPSequence analysis

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Tubulin gamma-2 chain
Alternative name(s):
Gamma-2-tubulin
Gene namesi
Name:TUBG2
Synonyms:TUBC
Ordered Locus Names:Os05g0156600, LOC_Os05g06450
ORF Names:P0431G05.16, P0676G05.6
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Microtubule

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 469469Tubulin gamma-2 chainPRO_0000048475Add
BLAST

Proteomic databases

PaxDbiO49068.

Expressioni

Gene expression databases

ExpressionAtlasiO49068. baseline and differential.
GenevisibleiO49068. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g06450.1.

Structurei

3D structure databases

ProteinModelPortaliO49068.
SMRiO49068. Positions 2-449.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the tubulin family.Curated

Phylogenomic databases

eggNOGiKOG1374. Eukaryota.
COG5023. LUCA.
HOGENOMiHOG000165714.
InParanoidiO49068.
KOiK10389.
OMAiEHGINKE.

Family and domain databases

Gene3Di1.10.287.600. 1 hit.
3.30.1330.20. 1 hit.
3.40.50.1440. 1 hit.
InterProiIPR002454. Gamma_tubulin.
IPR008280. Tub_FtsZ_C.
IPR000217. Tubulin.
IPR018316. Tubulin/FtsZ_2-layer-sand-dom.
IPR023123. Tubulin_C.
IPR017975. Tubulin_CS.
IPR003008. Tubulin_FtsZ_GTPase.
[Graphical view]
PANTHERiPTHR11588. PTHR11588. 1 hit.
PTHR11588:SF7. PTHR11588:SF7. 1 hit.
PfamiPF00091. Tubulin. 1 hit.
PF03953. Tubulin_C. 1 hit.
[Graphical view]
PRINTSiPR01164. GAMMATUBULIN.
PR01161. TUBULIN.
SMARTiSM00864. Tubulin. 1 hit.
SM00865. Tubulin_C. 1 hit.
[Graphical view]
SUPFAMiSSF52490. SSF52490. 1 hit.
SSF55307. SSF55307. 1 hit.
PROSITEiPS00227. TUBULIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O49068-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQGGDRKDV
60 70 80 90 100
FFYQADDQHY IPRALLVDLE PRVINGIQNS EYRNLYNHEN IFVAEHGGGA
110 120 130 140 150
GNNWASGYHQ GEQVVDDIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG
160 170 180 190 200
SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
210 220 230 240 250
CVVVLDNTAL NRIAVERLHL ANPTFAQTNS LVSTVMSAST TTLRYPGYMN
260 270 280 290 300
NDLVGLLASL IPTPRCHFLM TGYTPLTVER QVNMIRKTTV LDVMRRLLQT
310 320 330 340 350
KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF
360 370 380 390 400
IEWGPASIQV ALSRKSPYVQ TTHRVSGLML ANHTSIRHLF SKCLGQYEKL
410 420 430 440 450
RKKQAFLDNY RKFPMFEDND LSEFDESREI IESLVDEYKA CESPDYIKWG
460
MEDAGEANVA AALDSKLVV
Length:469
Mass (Da):52,870
Last modified:June 1, 1998 - v1
Checksum:i4BDE598F64D69655
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036957 mRNA. Translation: AAB92557.1.
AC087425 Genomic DNA. Translation: AAS55777.2.
AC087551 Genomic DNA. Translation: AAV32229.1.
AP008211 Genomic DNA. Translation: BAF16612.1.
AP014961 Genomic DNA. Translation: BAS92366.1.
AK102557 mRNA. Translation: BAG95612.1.
RefSeqiXP_015639857.1. XM_015784371.1.
UniGeneiOs.2349.

Genome annotation databases

EnsemblPlantsiOS05T0156600-01; OS05T0156600-01; OS05G0156600.
GeneIDi4337861.
GrameneiOS05T0156600-01; OS05T0156600-01; OS05G0156600.
KEGGiosa:4337861.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF036957 mRNA. Translation: AAB92557.1.
AC087425 Genomic DNA. Translation: AAS55777.2.
AC087551 Genomic DNA. Translation: AAV32229.1.
AP008211 Genomic DNA. Translation: BAF16612.1.
AP014961 Genomic DNA. Translation: BAS92366.1.
AK102557 mRNA. Translation: BAG95612.1.
RefSeqiXP_015639857.1. XM_015784371.1.
UniGeneiOs.2349.

3D structure databases

ProteinModelPortaliO49068.
SMRiO49068. Positions 2-449.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g06450.1.

Proteomic databases

PaxDbiO49068.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0156600-01; OS05T0156600-01; OS05G0156600.
GeneIDi4337861.
GrameneiOS05T0156600-01; OS05T0156600-01; OS05G0156600.
KEGGiosa:4337861.

Phylogenomic databases

eggNOGiKOG1374. Eukaryota.
COG5023. LUCA.
HOGENOMiHOG000165714.
InParanoidiO49068.
KOiK10389.
OMAiEHGINKE.

Gene expression databases

ExpressionAtlasiO49068. baseline and differential.
GenevisibleiO49068. OS.

Family and domain databases

Gene3Di1.10.287.600. 1 hit.
3.30.1330.20. 1 hit.
3.40.50.1440. 1 hit.
InterProiIPR002454. Gamma_tubulin.
IPR008280. Tub_FtsZ_C.
IPR000217. Tubulin.
IPR018316. Tubulin/FtsZ_2-layer-sand-dom.
IPR023123. Tubulin_C.
IPR017975. Tubulin_CS.
IPR003008. Tubulin_FtsZ_GTPase.
[Graphical view]
PANTHERiPTHR11588. PTHR11588. 1 hit.
PTHR11588:SF7. PTHR11588:SF7. 1 hit.
PfamiPF00091. Tubulin. 1 hit.
PF03953. Tubulin_C. 1 hit.
[Graphical view]
PRINTSiPR01164. GAMMATUBULIN.
PR01161. TUBULIN.
SMARTiSM00864. Tubulin. 1 hit.
SM00865. Tubulin_C. 1 hit.
[Graphical view]
SUPFAMiSSF52490. SSF52490. 1 hit.
SSF55307. SSF55307. 1 hit.
PROSITEiPS00227. TUBULIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of a cDNA (OstubG2) encoding a gamma-tubulin in the rice plant (Oryza sativa)."
    Kim Y.-K., Cha Y.-K., Jun H.-Y., Kim J.-D., Choi J.-S., Kim H.-R., Han I.-S.
    Plant Gene Register PGR99-186
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Yeongnambyeo.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  6. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiTBG2_ORYSJ
AccessioniPrimary (citable) accession number: O49068
Secondary accession number(s): Q0DKL1, Q5WMX2, Q75M06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: June 1, 1998
Last modified: June 8, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.