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Protein
Submitted name:

CLB1

Gene
N/A
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
CLB1Imported
Submitted name:
Uncharacterized proteinImported
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
Proteomesi
  • UP000004994 Componenti: Chromosome 1

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2419HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi4081.Solyc01g094030.2.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini249 – 34698C2InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 C2 domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1012. Eukaryota.
COG5038. LUCA.
OMAiADPEPKI.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
InterProiIPR000008. C2_dom.
IPR031069. CLB_plant.
IPR031468. SMP_LBD.
[Graphical view]
PANTHERiPTHR10774:SF51. PTHR10774:SF51. 1 hit.
PfamiPF00168. C2. 1 hit.
PF17047. SMP_LBD. 1 hit.
[Graphical view]
SMARTiSM00239. C2. 1 hit.
[Graphical view]
SUPFAMiSSF49562. SSF49562. 1 hit.
PROSITEiPS50004. C2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O48645-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLISGILMG MICGIGLMAV WKHMTRYRSN KRIAKAVDVK VMGCLCRDDL
60 70 80 90 100
KKVCGDNFPE WISFPVYEQV KWLNKQLSKL WPSIAEAGEA IIKESVEPLL
110 120 130 140 150
EDYRPPGITS LKFSKLSLGT VAPKIEGIRV QSLKKGQITM DIDLRWGGDP
160 170 180 190 200
NIVLGVEAAM VASIPIQLKN LQVFTVIRVI FQLTEEIPCI SAVVVALLSE
210 220 230 240 250
PKPRIDYVLK AVGGSLTALP GLSDMIDDTV NTIVTDMLEW PHRIVVPIAP
260 270 280 290 300
VDTSDLELKP QGKLTVTIVK ANGLKNHEMI GKSDPYAVVH IRPLFKVKTK
310 320 330 340 350
TIDNNLNPVW DQTFELIAED KETQSLFIEV FDKDNIGQDQ RMGVAKLPLN
360 370 380 390 400
ELVADAAKEI ELRLLPKLDM LKVKDKKDRG TITIKVLYHE FNKEEQLAAL
410 420 430 440 450
EAEKAILEER KKLKAEGVIG STMDAVGSGV GMVGSGIGAG VGLVGTGLGA
460 470 480 490 500
GVGIVGSGFG AVGSGLSKAG KFMGRTFTGS SKKNGSSTPV NSVQENGGAK

PLKSE
Length:505
Mass (Da):54,634
Last modified:June 1, 1998 - v1
Checksum:iCA615C6A55198670
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001389 mRNA. Translation: BAA24382.1.
PIRiT04143.
RefSeqiNP_001231830.1. NM_001244901.1.
XP_010323781.1. XM_010325479.1.
XP_010323784.1. XM_010325482.1.
UniGeneiLes.95.

Genome annotation databases

EnsemblPlantsiSolyc01g094030.2.1; Solyc01g094030.2.1; Solyc01g094030.2.
GeneIDi543501.
GrameneiSolyc01g094030.2.1; Solyc01g094030.2.1; Solyc01g094030.2.
KEGGisly:543501.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001389 mRNA. Translation: BAA24382.1.
PIRiT04143.
RefSeqiNP_001231830.1. NM_001244901.1.
XP_010323781.1. XM_010325479.1.
XP_010323784.1. XM_010325482.1.
UniGeneiLes.95.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4081.Solyc01g094030.2.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSolyc01g094030.2.1; Solyc01g094030.2.1; Solyc01g094030.2.
GeneIDi543501.
GrameneiSolyc01g094030.2.1; Solyc01g094030.2.1; Solyc01g094030.2.
KEGGisly:543501.

Phylogenomic databases

eggNOGiKOG1012. Eukaryota.
COG5038. LUCA.
OMAiADPEPKI.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
InterProiIPR000008. C2_dom.
IPR031069. CLB_plant.
IPR031468. SMP_LBD.
[Graphical view]
PANTHERiPTHR10774:SF51. PTHR10774:SF51. 1 hit.
PfamiPF00168. C2. 1 hit.
PF17047. SMP_LBD. 1 hit.
[Graphical view]
SMARTiSM00239. C2. 1 hit.
[Graphical view]
SUPFAMiSSF49562. SSF49562. 1 hit.
PROSITEiPS50004. C2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel gene of tomato preferentially expressed in fruit encodes a protein with a Ca2+-dependent lipid-binding domain."
    Kiyosue T., Ryan C.A.
    Plant Mol. Biol. 35:969-972(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing."
    Budiman M.A., Mao L., Wood T.C., Wing R.A.
    Genome Res. 10:129-136(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Heinz 1706Imported.
  3. "Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments."
    Wang Y., van der Hoeven R.S., Nielsen R., Mueller L.A., Tanksley S.D.
    Theor. Appl. Genet. 112:72-84(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Heinz 1706Imported.
  4. EnsemblPlants
    Submitted (JUN-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: cv. Heinz 1706Imported.

Entry informationi

Entry nameiO48645_SOLLC
AccessioniPrimary (citable) accession number: O48645
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.