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O47878 (O47878_ALLMI) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Cytochrome b RuleBase RU000300
Gene names
Name:cytb EMBL ACF20285.1
Encoded onMitochondrion EMBL CAA73573.1
OrganismAlligator mississippiensis (American alligator) EMBL CAA73573.1
Taxonomic identifier8496 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archosauria › Crocodylia › Alligatoridae › Alligatorinae › Alligator

Protein attributes

Sequence length386 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Function

Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis By similarity. RuleBase RU000300

Cofactor

Binds 2 heme groups non-covalently By similarity. RuleBase RU000300

Sequence similarities

Belongs to the cytochrome b family. RuleBase RU000300

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue3861 EMBL CAA73573.1

Sequences

Sequence LengthMass (Da)Tools
O47878 [UniParc].

Last modified June 1, 1998. Version 1.
Checksum: AC9E1EC6CF9DFB49

FASTA38643,270
        10         20         30         40         50         60 
MTHQLRKSHP IIKLINRSLI DLPTPSNISA WWNFGSLLGL TLLIQILTGF FLMMHFSSSD 

        70         80         90        100        110        120 
TLAFSSVSYT SREVWFGWLI RNLHTNGASL FFMFIFLHIG RGLYYTSYLH ESTWNIGVIM 

       130        140        150        160        170        180 
LLLLMATAFM GYVLPWGQMS FWGATVITNL LSATPYVGST VVPWIWGGPS VDNATLTRFT 

       190        200        210        220        230        240 
ALHFLLPFAL LASLITHLIF LHERGSFNPL GISPNADKIP FHPYFTMKDA LGAALAASSL 

       250        260        270        280        290        300 
LILALYLPAL LGDPENFTPA NSMITPTHIK PEWYFLFAYA ILRSIPNKLG GVLAMFSSIL 

       310        320        330        340        350        360 
VLFLMPALHT AKQQPMSMRP MSQLLFWALT LDFLLLTWIG GQPVNPPYIL IGQTASLFYF 

       370        380 
IIILILMPMA GLLENKMVEP TYVTPK

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References

[1]"The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)."
Janke A., Arnason U.
Mol. Biol. Evol. 14:1266-1272(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Liver EMBL CAA73573.1.
[2]"Phylogeny of birds and placement of turtles based on whole mitochondrial genomes."
Mindell D.P., Sorenson M.D., Dimcheff D.E., Hasegawa M., Yuri T.
Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Primers for a PCR-based approach to complete mitochondrial genome sequencing."
Sorenson M.D., Dimcheff D.E., Ast J.C., Yuri T., Mindell D.P.
Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Radiation of marsupials after the K/T boundary: evidence from complete mitochondrial genomes."
Nilsson M.A., Gullberg A., Spotorno A.E., Arnason U., Janke A.
J. Mol. Evol. 57:3-12(2003)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Liver EMBL CAA73573.1.
[5]"Radiation of marsupials after the K/T boundary: evidence from complete mitochondrial genomes."
Nilsson M.A., Gullberg A., Spotorno A.E., Arnason U., Janke A.
J. Mol. Evol. 57:S3-S12(2003)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Liver EMBL CAA73573.1.
[6]"Marsupial relationships and a timeline for marsupial radiation in South Gondwana."
Nilsson M.A., Arnason U., Spencer P.B.S., Janke A.
Gene 340:189-196(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Liver EMBL CAA73573.1.
[7]"Mitochondrial DNA phylogeography of Caiman crocodilus in Mesoamerica and South America."
Venegas-Anaya M., Crawford A.J., Escobedo Galvan A.H., Sanjur O.I., Densmore L.D.III., Bermingham E.
J. Exp. Zool. Part A Ecol. Genet. Physiol. 309:614-627(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AF069428 Genomic DNA. Translation: AAD09991.1.
EU496863 Genomic DNA. Translation: ACF20285.1.
Y13113 Genomic DNA. Translation: CAA73573.1.
PIRT11286.
RefSeqNP_007574.1. NC_001922.1.

3D structure databases

ProteinModelPortalO47878.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID808241.

Organism-specific databases

CTD4519.

Phylogenomic databases

HOVERGENHBG017694.
ProtClustDBMTH00119.

Family and domain databases

InterProIPR016175. Cyt_b/b6.
IPR005798. Cyt_b/b6_C.
IPR005797. Cyt_b/b6_N.
IPR016174. Di-haem_cyt_TM.
[Graphical view]
PANTHERPTHR19271. PTHR19271. 1 hit.
PfamPF00032. Cytochrom_B_C. 1 hit.
PF13631. Cytochrom_B_N_2. 1 hit.
[Graphical view]
SUPFAMSSF81648. Cytochrome_b/b6_C. 1 hit.
SSF81342. Transmembr_di-haem_cytochrome. 1 hit.
PROSITEPS51003. CYTB_CTER. 1 hit.
PS51002. CYTB_NTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO47878_ALLMI
AccessionPrimary (citable) accession number: O47878
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 1, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info