O46173 (O46173_DROME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Y-box protein EMBL AAB94634.1

Gene names

Name:	yps EMBL AAB94634.1
ORF Names:	CG5654 FlyBase FBgn0022959

Organism

Drosophila melanogaster (Fruit fly)

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	359 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 CSD (cold-shock) domain. RuleBase RU000407

Ontologies

Gene Ontology (GO)
Biological process	nuclear mRNA splicing, via spliceosome Inferred by curator. Source: FlyBase oogenesis Non-traceable author statement. Source: FlyBase regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	catalytic step 2 spliceosome Inferred from direct assay. Source: FlyBase precatalytic spliceosome Inferred from direct assay. Source: FlyBase
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro mRNA binding Traceable author statement. Source: FlyBase
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O46173 [UniParc]. Last modified June 1, 1998. Version 1. Checksum: 64CA1D9E144AFF3D	FASTA	359	38,941
	10 20 30 40 50 60 MADAAESKPL AAEQQQQAQQ QPEQQQNPPN PQEQDHEQEP LDELQGQQGQ PAPPTKEVIA 70 80 90 100 110 120 TKVTGTVKWF NVKSGYGFIN RNDTREDVFV HQSAIANNPK KAVRSVGDGE VVEFDVVIGE 130 140 150 160 170 180 KGNEAANVTG PSGEPVRGSQ FAADKRRNFR PWMKKNRRKD GEVEGEDAES SAQQQQQQAA 190 200 210 220 230 240 PIVDGQPQQQ VQSGPRQPRQ NFRRGPPGGP PGGPRGGPRG PPGGAPGGPR RYNNYYLRQP 250 260 270 280 290 300 RRGLGGGDGS AEPGVHDQNP EGLQRGEGQG PRRGGGPPAG PQRRFFRRNF NNGPPPPRRD 310 320 330 340 350 GRIHSRPGTA TPTTATSTSA RGNQMALAVV RSSSQRRTAL KSCKIQPQRA LHRKGSERI

References

[1]	"Identification and developmental characterization of a novel Y-box protein from Drosophila melanogaster." Thieringer H.A., Singh K., Trivedi H., Inouye M. Nucleic Acids Res. 25:4764-4770(1997) [PubMed: 9365254] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U49120 mRNA. Translation: AAB94634.1.
3D structure databases
HSSP	HSSP built from PDB template 1G6P based on UniProtKB O54310.
ProteinModelPortal	O46173.
SMR	O46173. Positions 56-131.
ModBase	Search...
Protein-protein interaction databases
IntAct	O46173. 1 interaction.
STRING	O46173.
Proteomic databases
PRIDE	O46173.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
FlyBase	FBgn0022959. yps.
Phylogenomic databases
InParanoid	O46173.
OrthoDB	EOG4MPG6H.
Gene expression databases
ArrayExpress	O46173.
Bgee	O46173.
Family and domain databases
InterPro	IPR019844. Cold-shock_CS. IPR011129. Cold_shock_prot. IPR002059. CSP_DNA-bd. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
Pfam	PF00313. CSD. 1 hit. [Graphical view]
PRINTS	PR00050. COLDSHOCK.
SMART	SM00357. CSP. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00352. COLD_SHOCK. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O46173_DROME

Accession

Primary (citable) accession number: O46173

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 1998
Last sequence update:	June 1, 1998
Last modified:	October 19, 2011
This is version 73 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)