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Protein
Submitted name:

Y-box protein

Gene

yps

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: InterPro
  • mRNA binding Source: FlyBase
  • nucleic acid binding Source: FlyBase

GO - Biological processi

  • mRNA splicing, via spliceosome Source: FlyBase
  • oogenesis Source: FlyBase
  • regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Y-box proteinImported
Gene namesi
Name:ypsImported
ORF Names:CG5654Imported
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Organism-specific databases

FlyBaseiFBgn0022959. yps.

Subcellular locationi

GO - Cellular componenti

  • catalytic step 2 spliceosome Source: FlyBase
  • precatalytic spliceosome Source: FlyBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiO46173.
PRIDEiO46173.

Interactioni

Protein-protein interaction databases

IntActiO46173. 1 interaction.
STRINGi7227.FBpp0075759.

Structurei

3D structure databases

ProteinModelPortaliO46173.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini64 – 13168CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
OrthoDBiEOG7TBC44.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O46173-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADAAESKPL AAEQQQQAQQ QPEQQQNPPN PQEQDHEQEP LDELQGQQGQ
60 70 80 90 100
PAPPTKEVIA TKVTGTVKWF NVKSGYGFIN RNDTREDVFV HQSAIANNPK
110 120 130 140 150
KAVRSVGDGE VVEFDVVIGE KGNEAANVTG PSGEPVRGSQ FAADKRRNFR
160 170 180 190 200
PWMKKNRRKD GEVEGEDAES SAQQQQQQAA PIVDGQPQQQ VQSGPRQPRQ
210 220 230 240 250
NFRRGPPGGP PGGPRGGPRG PPGGAPGGPR RYNNYYLRQP RRGLGGGDGS
260 270 280 290 300
AEPGVHDQNP EGLQRGEGQG PRRGGGPPAG PQRRFFRRNF NNGPPPPRRD
310 320 330 340 350
GRIHSRPGTA TPTTATSTSA RGNQMALAVV RSSSQRRTAL KSCKIQPQRA

LHRKGSERI
Length:359
Mass (Da):38,941
Last modified:June 1, 1998 - v1
Checksum:i64CA1D9E144AFF3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49120 mRNA. Translation: AAB94634.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49120 mRNA. Translation: AAB94634.1.

3D structure databases

ProteinModelPortaliO46173.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO46173. 1 interaction.
STRINGi7227.FBpp0075759.

Proteomic databases

PaxDbiO46173.
PRIDEiO46173.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

FlyBaseiFBgn0022959. yps.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
OrthoDBiEOG7TBC44.

Miscellaneous databases

ChiTaRSiyps. fly.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Identification and developmental characterization of a novel Y-box protein from Drosophila melanogaster."
    Thieringer H.A., Singh K., Trivedi H., Inouye M.
    Nucleic Acids Res. 25:4764-4770(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO46173_DROME
AccessioniPrimary (citable) accession number: O46173
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.