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Protein

40S ribosomal protein S26

Gene

rps-26

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S26
Gene namesi
Name:rps-26
ORF Names:F39B2.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF39B2.6; CE16012; WBGene00004495; rps-26.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11711740S ribosomal protein S26PRO_0000204518Add
BLAST

Proteomic databases

EPDiO45499.
PaxDbiO45499.
PRIDEiO45499.

Interactioni

Protein-protein interaction databases

STRINGi6239.F39B2.6.2.

Structurei

3D structure databases

ProteinModelPortaliO45499.
SMRiO45499. Positions 2-101.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S26e family.Curated

Phylogenomic databases

eggNOGiKOG1768. Eukaryota.
COG4830. LUCA.
GeneTreeiENSGT00390000002517.
HOGENOMiHOG000108824.
InParanoidiO45499.
KOiK02976.
OMAiCSRCVGK.
PhylomeDBiO45499.

Family and domain databases

InterProiIPR000892. Ribosomal_S26e.
[Graphical view]
PANTHERiPTHR12538. PTHR12538. 1 hit.
PfamiPF01283. Ribosomal_S26e. 1 hit.
[Graphical view]
PROSITEiPS00733. RIBOSOMAL_S26E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O45499-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFKRRNHGR NKKNRGHVAF IRCTNCGRCC PKDKAIKKFV VRNIVEAAAV
60 70 80 90 100
RDIGDASAYT QYALPKLYHK LHYCIACAIH SKVVRNRSRE ARRDRNPPPR
110
FGQRAAAARP GAPGPRP
Length:117
Mass (Da):13,249
Last modified:June 1, 1998 - v1
Checksum:i0FB79092B80B605D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z92834 Genomic DNA. Translation: CAB07387.1.
PIRiT21988.
RefSeqiNP_493571.1. NM_061170.5.
UniGeneiCel.18312.

Genome annotation databases

EnsemblMetazoaiF39B2.6.1; F39B2.6.1; WBGene00004495.
F39B2.6.2; F39B2.6.2; WBGene00004495.
GeneIDi173342.
KEGGicel:CELE_F39B2.6.
UCSCiF39B2.6.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z92834 Genomic DNA. Translation: CAB07387.1.
PIRiT21988.
RefSeqiNP_493571.1. NM_061170.5.
UniGeneiCel.18312.

3D structure databases

ProteinModelPortaliO45499.
SMRiO45499. Positions 2-101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F39B2.6.2.

Proteomic databases

EPDiO45499.
PaxDbiO45499.
PRIDEiO45499.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF39B2.6.1; F39B2.6.1; WBGene00004495.
F39B2.6.2; F39B2.6.2; WBGene00004495.
GeneIDi173342.
KEGGicel:CELE_F39B2.6.
UCSCiF39B2.6.1. c. elegans.

Organism-specific databases

CTDi173342.
WormBaseiF39B2.6; CE16012; WBGene00004495; rps-26.

Phylogenomic databases

eggNOGiKOG1768. Eukaryota.
COG4830. LUCA.
GeneTreeiENSGT00390000002517.
HOGENOMiHOG000108824.
InParanoidiO45499.
KOiK02976.
OMAiCSRCVGK.
PhylomeDBiO45499.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi879249.
PROiO45499.

Family and domain databases

InterProiIPR000892. Ribosomal_S26e.
[Graphical view]
PANTHERiPTHR12538. PTHR12538. 1 hit.
PfamiPF01283. Ribosomal_S26e. 1 hit.
[Graphical view]
PROSITEiPS00733. RIBOSOMAL_S26E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRS26_CAEEL
AccessioniPrimary (citable) accession number: O45499
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2003
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.