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Protein

40S ribosomal protein S26

Gene

rps-26

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S26
Gene namesi
Name:rps-26
ORF Names:F39B2.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF39B2.6; CE16012; WBGene00004495; rps-26.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002045181 – 11740S ribosomal protein S26Add BLAST117

Proteomic databases

EPDiO45499.
PaxDbiO45499.
PeptideAtlasiO45499.
PRIDEiO45499.

Expressioni

Gene expression databases

BgeeiWBGene00004495.

Interactioni

Protein-protein interaction databases

STRINGi6239.F39B2.6.2.

Structurei

3D structure databases

ProteinModelPortaliO45499.
SMRiO45499.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1768. Eukaryota.
COG4830. LUCA.
GeneTreeiENSGT00390000002517.
HOGENOMiHOG000108824.
InParanoidiO45499.
KOiK02976.
OMAiDKAICVT.
OrthoDBiEOG091G19WY.
PhylomeDBiO45499.

Family and domain databases

InterProiView protein in InterPro
IPR000892. Ribosomal_S26e.
PANTHERiPTHR12538. PTHR12538. 1 hit.
PfamiView protein in Pfam
PF01283. Ribosomal_S26e. 1 hit.
PROSITEiView protein in PROSITE
PS00733. RIBOSOMAL_S26E. 1 hit.

Sequencei

Sequence statusi: Complete.

O45499-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFKRRNHGR NKKNRGHVAF IRCTNCGRCC PKDKAIKKFV VRNIVEAAAV
60 70 80 90 100
RDIGDASAYT QYALPKLYHK LHYCIACAIH SKVVRNRSRE ARRDRNPPPR
110
FGQRAAAARP GAPGPRP
Length:117
Mass (Da):13,249
Last modified:June 1, 1998 - v1
Checksum:i0FB79092B80B605D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z92834 Genomic DNA. Translation: CAB07387.1.
PIRiT21988.
RefSeqiNP_493571.1. NM_061170.5.
UniGeneiCel.18312.

Genome annotation databases

EnsemblMetazoaiF39B2.6.1; F39B2.6.1; WBGene00004495.
F39B2.6.2; F39B2.6.2; WBGene00004495.
GeneIDi173342.
KEGGicel:CELE_F39B2.6.
UCSCiF39B2.6.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS26_CAEEL
AccessioniPrimary (citable) accession number: O45499
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2003
Last sequence update: June 1, 1998
Last modified: June 7, 2017
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families