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Protein

Serpentine receptor class gamma-30

Gene

srg-30

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Serpentine receptor class gamma-30
Short name:
Protein srg-30
Gene namesi
Name:srg-30
ORF Names:W02F12.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiW02F12.7; CE38112; WBGene00005187; srg-30.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei18 – 3821HelicalSequence analysisAdd
BLAST
Transmembranei59 – 7921HelicalSequence analysisAdd
BLAST
Transmembranei98 – 11821HelicalSequence analysisAdd
BLAST
Transmembranei137 – 15721HelicalSequence analysisAdd
BLAST
Transmembranei189 – 20921HelicalSequence analysisAdd
BLAST
Transmembranei223 – 24321HelicalSequence analysisAdd
BLAST
Transmembranei260 – 28021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 299299Serpentine receptor class gamma-30PRO_0000104568Add
BLAST

Proteomic databases

PaxDbiO45150.
PRIDEiO45150.

Interactioni

Protein-protein interaction databases

STRINGi6239.W02F12.7.

Structurei

3D structure databases

ProteinModelPortaliO45150.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410K7WM. Eukaryota.
ENOG4110KZW. LUCA.
GeneTreeiENSGT00530000064349.
InParanoidiO45150.
OMAiPPVIMLC.
OrthoDBiEOG7RV9MF.
PhylomeDBiO45150.

Family and domain databases

InterProiIPR000609. 7TM_GPCR_serpentine_rcpt_Srg.
[Graphical view]
PfamiPF02118. Srg. 1 hit.
[Graphical view]
PRINTSiPR00698. TMPROTEINSRG.

Sequencei

Sequence statusi: Complete.

O45150-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKCHPGFNT KLELLKYGIQ FVYFIVGLGF HFAVIKVLHK KWSVYSKYPF
60 70 80 90 100
LKLYYVDSIL SVLIILLDLV LIRVFNYIPP LCQWVLQEFP EPSQLISILF
110 120 130 140 150
IEQYLQFVKS LIFCFMVVNR ANNVICVKSF GTIQSCIIPH VIVFCILCPL
160 170 180 190 200
LGVWTAFLSD SRFVPFQGGF IHETMMEYHW ITVSQFSVII SSITIVTVCI
210 220 230 240 250
CSVISMLCIS RTHAENKHTE QSLTASALAM SIFYVFALSM NIYCQKAHAS
260 270 280 290
SLEMLEFWKA LTAFAFDIIL VCPPVIMLCL NVRLRINVFS VDTRPTSPK
Length:299
Mass (Da):34,260
Last modified:March 15, 2005 - v3
Checksum:i0F9A6EEF7FB5427E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081630 Genomic DNA. Translation: CCD72938.1.
PIRiT32998.
RefSeqiNP_504702.3. NM_072301.3.
UniGeneiCel.27919.

Genome annotation databases

EnsemblMetazoaiW02F12.7; W02F12.7; WBGene00005187.
GeneIDi189125.
KEGGicel:CELE_W02F12.7.
UCSCiW02F12.7. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081630 Genomic DNA. Translation: CCD72938.1.
PIRiT32998.
RefSeqiNP_504702.3. NM_072301.3.
UniGeneiCel.27919.

3D structure databases

ProteinModelPortaliO45150.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.W02F12.7.

Proteomic databases

PaxDbiO45150.
PRIDEiO45150.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiW02F12.7; W02F12.7; WBGene00005187.
GeneIDi189125.
KEGGicel:CELE_W02F12.7.
UCSCiW02F12.7. c. elegans.

Organism-specific databases

CTDi189125.
WormBaseiW02F12.7; CE38112; WBGene00005187; srg-30.

Phylogenomic databases

eggNOGiENOG410K7WM. Eukaryota.
ENOG4110KZW. LUCA.
GeneTreeiENSGT00530000064349.
InParanoidiO45150.
OMAiPPVIMLC.
OrthoDBiEOG7RV9MF.
PhylomeDBiO45150.

Miscellaneous databases

PROiO45150.

Family and domain databases

InterProiIPR000609. 7TM_GPCR_serpentine_rcpt_Srg.
[Graphical view]
PfamiPF02118. Srg. 1 hit.
[Graphical view]
PRINTSiPR00698. TMPROTEINSRG.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiSRG30_CAEEL
AccessioniPrimary (citable) accession number: O45150
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2005
Last sequence update: March 15, 2005
Last modified: June 8, 2016
This is version 89 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.