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Protein
Submitted name:

MADF domain transcription factor

Gene

madf-11

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
MADF domain transcription factorImported
Gene namesi
Name:madf-11Imported
ORF Names:C05D2.6Imported, CELE_C05D2.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC05D2.6a; CE32115; WBGene00015468; madf-11.

PTM / Processingi

Proteomic databases

EPDiO45133.
PaxDbiO45133.
PRIDEiO45133.

Expressioni

Gene expression databases

BgeeiWBGene00015468.
ExpressionAtlasiO45133. baseline.

Interactioni

Protein-protein interaction databases

STRINGi6239.C05D2.6a.

Structurei

3D structure databases

ProteinModelPortaliO45133.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 14389MADF DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410K8SV. Eukaryota.
ENOG4110K21. LUCA.
HOGENOMiHOG000018789.
InParanoidiO45133.
OMAiIRNDIVW.
OrthoDBiEOG091G0DBG.

Family and domain databases

InterProiIPR006578. MADF-dom.
[Graphical view]
PfamiPF10545. MADF_DNA_bdg. 1 hit.
[Graphical view]
PROSITEiPS51029. MADF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O45133-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDRRRHGTE DYQIAGLKHS MTSVASSSHG GAGDLQQQFS REDPPVKTTQ
60 70 80 90 100
YTLLQLINMV RENPILYDEE MQAATPDAQL KVQKREAWDR IRADIVWQDI
110 120 130 140 150
TLVQEVWSDL LDQYARKSID MSDGLIEAMR WTDSLIFKKK SDSRPPSQLT
160 170 180 190 200
AMSSGLDKDF YNDVPLAEDV LEPGQSLGNS ESMKFDYVVI QPHVRPHQQI
210 220 230 240 250
PTSSYSRRKS PQSRETEAIV RTYPLSPKRI VQQHRMPQKN NPDQQHQMNE
260 270 280 290 300
VKKEVNPFGR QGVLVEVEPS PSYAQSNTKI YKMVSAHRSA TPQPAVTVAS
310 320 330 340 350
SRRLVHMPHR TNSLVYDSMP ELIDSSNMPS EPPKKKIHLE VGHRNSEMVG
360 370 380 390 400
VSTSSNAPCL PKEILTDGVP IADDEIILEA DGECKIGSGM LLESQQSSSQ
410 420 430 440 450
NHEMDMPSTS MDHYHHQDID DGGVGDDIEQ QVVVGGPSDE MAIQYDEDLA
460 470 480 490 500
FQQHINSVLN RLSDDEKSVM KFNMQKIILD ARFGLGTARN MLKHDEMLEV
510
ESHVEIDPNH EVPEEI
Length:516
Mass (Da):58,256
Last modified:March 1, 2003 - v3
Checksum:i9596EBB5A0855743
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD63125.1.
RefSeqiNP_001033347.1. NM_001038258.3.
UniGeneiCel.34189.

Genome annotation databases

EnsemblMetazoaiC05D2.6a; C05D2.6a; WBGene00015468.
GeneIDi175775.
UCSCiC05D2.6a. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD63125.1.
RefSeqiNP_001033347.1. NM_001038258.3.
UniGeneiCel.34189.

3D structure databases

ProteinModelPortaliO45133.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C05D2.6a.

Proteomic databases

EPDiO45133.
PaxDbiO45133.
PRIDEiO45133.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC05D2.6a; C05D2.6a; WBGene00015468.
GeneIDi175775.
UCSCiC05D2.6a. c. elegans.

Organism-specific databases

CTDi175775.
WormBaseiC05D2.6a; CE32115; WBGene00015468; madf-11.

Phylogenomic databases

eggNOGiENOG410K8SV. Eukaryota.
ENOG4110K21. LUCA.
HOGENOMiHOG000018789.
InParanoidiO45133.
OMAiIRNDIVW.
OrthoDBiEOG091G0DBG.

Gene expression databases

BgeeiWBGene00015468.
ExpressionAtlasiO45133. baseline.

Family and domain databases

InterProiIPR006578. MADF-dom.
[Graphical view]
PfamiPF10545. MADF_DNA_bdg. 1 hit.
[Graphical view]
PROSITEiPS51029. MADF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO45133_CAEEL
AccessioniPrimary (citable) accession number: O45133
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 90 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.