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Protein
Submitted name:

SNAIl family zinc finger 2 transcription factor homolog

Gene

snai-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

SignaLinkiO45103.

Names & Taxonomyi

Protein namesi
Submitted name:
SNAIl family zinc finger 2 transcription factor homologImported
Gene namesi
Name:snai-1Imported
Synonyms:snai-2Imported
ORF Names:CELE_K02D7.2Imported, K02D7.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiK02D7.2; CE30286; WBGene00019299; snai-1.

PTM / Processingi

Proteomic databases

PaxDbiO45103.
PRIDEiO45103.

Interactioni

Protein-protein interaction databases

IntActiO45103. 1 interaction.
STRINGi6239.K02D7.2.

Structurei

3D structure databases

ProteinModelPortaliO45103.
SMRiO45103. Positions 43-172.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 6828C2H2-typeInterPro annotationAdd
BLAST
Domaini70 – 9324C2H2-typeInterPro annotationAdd
BLAST
Domaini96 – 12328C2H2-typeInterPro annotationAdd
BLAST
Domaini124 – 15128C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
GeneTreeiENSGT00390000011027.
HOGENOMiHOG000020039.
InParanoidiO45103.
KOiK09218.
OMAiEKKHRCS.
OrthoDBiEOG7P2XSG.
PhylomeDBiO45103.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O45103-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSINTKRKSI FETIEDLISP DPAPSSSSSS ASCSSLDNQK LVCQFCKKTY
60 70 80 90 100
LTYFGLRRHL QFHKEGKLQQ SCPHCKKVYR SPGALKMHLK THSLPCVCND
110 120 130 140 150
CGKSFSRPWL LKGHLRTHTG EKPFGCEFCG RCFADRSNLR AHLQTHSGEK
160 170 180 190
KHRCSRCGQS FARVQVRQRH EQCCRGGGSG GEAEKEDVEV DGD
Length:193
Mass (Da):21,693
Last modified:June 1, 2002 - v2
Checksum:i8762100D84E5CD65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD69686.1.
PIRiT32983.
RefSeqiNP_499902.2. NM_067501.2.
UniGeneiCel.25313.

Genome annotation databases

EnsemblMetazoaiK02D7.2; K02D7.2; WBGene00019299.
GeneIDi186874.
KEGGicel:CELE_K02D7.2.
UCSCiK02D7.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD69686.1.
PIRiT32983.
RefSeqiNP_499902.2. NM_067501.2.
UniGeneiCel.25313.

3D structure databases

ProteinModelPortaliO45103.
SMRiO45103. Positions 43-172.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO45103. 1 interaction.
STRINGi6239.K02D7.2.

Proteomic databases

PaxDbiO45103.
PRIDEiO45103.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiK02D7.2; K02D7.2; WBGene00019299.
GeneIDi186874.
KEGGicel:CELE_K02D7.2.
UCSCiK02D7.2. c. elegans.

Organism-specific databases

CTDi186874.
WormBaseiK02D7.2; CE30286; WBGene00019299; snai-1.

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
GeneTreeiENSGT00390000011027.
HOGENOMiHOG000020039.
InParanoidiO45103.
KOiK09218.
OMAiEKKHRCS.
OrthoDBiEOG7P2XSG.
PhylomeDBiO45103.

Enzyme and pathway databases

SignaLinkiO45103.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO45103_CAEEL
AccessioniPrimary (citable) accession number: O45103
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 2002
Last modified: June 8, 2016
This is version 123 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.