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Protein
Submitted name:

DYnein Chain, light Intermediate

Gene

dyci-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-CEL-6807878. COPI-mediated anterograde transport.
SignaLinkiO45087.

Names & Taxonomyi

Protein namesi
Submitted name:
DYnein Chain, light IntermediateImported
Gene namesi
Name:dyci-1Imported
ORF Names:C17H12.1Imported, CELE_C17H12.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC17H12.1; CE16862; WBGene00015927; dyci-1.

PTM / Processingi

Proteomic databases

EPDiO45087.
PaxDbiO45087.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
dyrb-1Q227524EBI-313406,EBI-328280

Protein-protein interaction databases

DIPiDIP-25870N.
IntActiO45087. 3 interactions.
MINTiMINT-1066510.
STRINGi6239.C17H12.1.1.

Structurei

3D structure databases

ProteinModelPortaliO45087.
SMRiO45087. Positions 338-363, 380-618.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini479 – 617139WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili2 – 2928Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, WD repeatUniRule annotation

Phylogenomic databases

eggNOGiKOG1587. Eukaryota.
ENOG410XQ99. LUCA.
GeneTreeiENSGT00730000110228.
HOGENOMiHOG000116383.
InParanoidiO45087.
KOiK10415.
OMAiTHIDHGF.
OrthoDBiEOG7FR7FX.
PhylomeDBiO45087.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O45087-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSELRKLELE RKKQKLAELK SQRKREEDAR VQNLLRSTNE NGTTQNGTSR
60 70 80 90 100
QTLSSNEVED ILRQVGISTE PTVREESPAP PPGSHSDNHV DPSASHPRIS
110 120 130 140 150
NLLSVDLEFS SVQTACTDNK DSAIYSKGTQ TDDERISVGE FSLGSQEFDY
160 170 180 190 200
DDDMIMPMDH GQFRGRAHSH DQDSPLPYNE EIAKLLGQTK QGDKGLTRQE
210 220 230 240 250
TEEKKTQTVQ IVPPLSDEEK YRLTLDPEFL DSFNRSCKVI SRALNEEIDI
260 270 280 290 300
CINYTKDPYE KAIASDDLLH LAQVYQDETW TAKRLVTGMA FSEHYPDLLA
310 320 330 340 350
VSYGPCDIPN EPPGVIVVWN TKSKRMTAEF IVYCQSEIQS VAFARFHAHL
360 370 380 390 400
LLAGCESGQI CVWDNRLTSR KLPINRSPLT TQAHTYTVSC LAVVGTKNAH
410 420 430 440 450
NFVSLSRDGR ICSWNVDNLT QPVDGKELMT KEGKAASATR MSFPIGEMQT
460 470 480 490 500
FVVGTDTGEI LAASRNGADP AVIKTDVCYK GHSGTLTGIE FHRASGVVDF
510 520 530 540 550
SHLFISSSHD WTVKLWSTKD ANLKFSFESH PDLVLDVAWS PVHPAVFASI
560 570 580 590 600
DADGNIFVWN LNEDVEGPVA RLRAGAEGES VYMNRLIWSP DGKHVFVGDD
610 620 630 640
EGRVHMYDVR ESLYVLKSEE WNRFARVLSD MKQSNEEAEN YNM
Length:643
Mass (Da):72,048
Last modified:June 1, 1998 - v1
Checksum:i987FC6D953BCB1E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD64991.1.
PIRiH88712.
RefSeqiNP_501038.1. NM_068637.3.
UniGeneiCel.8817.

Genome annotation databases

EnsemblMetazoaiC17H12.1; C17H12.1; WBGene00015927.
GeneIDi177440.
KEGGicel:CELE_C17H12.1.
UCSCiC17H12.1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD64991.1.
PIRiH88712.
RefSeqiNP_501038.1. NM_068637.3.
UniGeneiCel.8817.

3D structure databases

ProteinModelPortaliO45087.
SMRiO45087. Positions 338-363, 380-618.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25870N.
IntActiO45087. 3 interactions.
MINTiMINT-1066510.
STRINGi6239.C17H12.1.1.

Proteomic databases

EPDiO45087.
PaxDbiO45087.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC17H12.1; C17H12.1; WBGene00015927.
GeneIDi177440.
KEGGicel:CELE_C17H12.1.
UCSCiC17H12.1.1. c. elegans.

Organism-specific databases

CTDi177440.
WormBaseiC17H12.1; CE16862; WBGene00015927; dyci-1.

Phylogenomic databases

eggNOGiKOG1587. Eukaryota.
ENOG410XQ99. LUCA.
GeneTreeiENSGT00730000110228.
HOGENOMiHOG000116383.
InParanoidiO45087.
KOiK10415.
OMAiTHIDHGF.
OrthoDBiEOG7FR7FX.
PhylomeDBiO45087.

Enzyme and pathway databases

ReactomeiR-CEL-6807878. COPI-mediated anterograde transport.
SignaLinkiO45087.

Miscellaneous databases

NextBioi896830.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO45087_CAEEL
AccessioniPrimary (citable) accession number: O45087
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 135 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.