Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Transgelin

Gene

cpn-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
TransgelinUniRule annotation
Gene namesi
Name:cpn-2Imported
ORF Names:CELE_D1069.2Imported, D1069.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiD1069.2a; CE38495; WBGene00000778; cpn-2.

PTM / Processingi

Proteomic databases

EPDiO44788.
PaxDbiO44788.

Expressioni

Gene expression databases

ExpressionAtlasiO44788. baseline.

Interactioni

Protein-protein interaction databases

STRINGi6239.D1069.2.1.

Structurei

3D structure databases

ProteinModelPortaliO44788.
SMRiO44788. Positions 33-157.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini24 – 137114Actin-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the calponin family.UniRule annotation
Contains 1 CH (calponin-homology) domain.UniRule annotation
Contains 1 calponin-like repeat.UniRule annotation

Phylogenomic databases

eggNOGiKOG2046. Eukaryota.
COG5199. LUCA.
HOGENOMiHOG000232113.
InParanoidiO44788.
OMAiKKNDARF.
OrthoDBiEOG73Z2VM.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR000557. Calponin_repeat.
IPR001715. CH-domain.
IPR003096. SM22_calponin.
[Graphical view]
PfamiPF00402. Calponin. 1 hit.
PF00307. CH. 1 hit.
[Graphical view]
PRINTSiPR00888. SM22CALPONIN.
SMARTiSM00033. CH. 1 hit.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS01052. CALPONIN_1. 1 hit.
PS51122. CALPONIN_2. 1 hit.
PS50021. CH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O44788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANHGPSYGL SRELQKKNDA RFVLEEAIEV LKWIENVTGE RFSFDVTTCE
60 70 80 90 100
SSTDVSNLLK DGVMLCKLIE KLDPSCRVVY NKKPKMAFPM MENISNFLAA
110 120 130 140 150
AKQFGVMEIS CFQTVDLYEN KQCYKVIECL RLLAAVAQSR SSHLEHPAWV
160 170 180 190 200
VKLAQSSPRQ FPEAVMRRGE MVIPLQYGTN KCASQKGMSP YGLPRQIKPD

PHG
Length:203
Mass (Da):22,921
Last modified:January 25, 2012 - v2
Checksum:i5D17B49922342C14
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD67128.1.
RefSeqiNP_493713.2. NM_061312.3.
UniGeneiCel.15589.

Genome annotation databases

EnsemblMetazoaiD1069.2.1; D1069.2.1; WBGene00000778.
D1069.2.2; D1069.2.2; WBGene00000778.
D1069.2a.1; D1069.2a.1; WBGene00000778.
D1069.2a.2; D1069.2a.2; WBGene00000778.
GeneIDi173424.
KEGGicel:CELE_D1069.2.
UCSCiD1069.2.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD67128.1.
RefSeqiNP_493713.2. NM_061312.3.
UniGeneiCel.15589.

3D structure databases

ProteinModelPortaliO44788.
SMRiO44788. Positions 33-157.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.D1069.2.1.

Proteomic databases

EPDiO44788.
PaxDbiO44788.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiD1069.2.1; D1069.2.1; WBGene00000778.
D1069.2.2; D1069.2.2; WBGene00000778.
D1069.2a.1; D1069.2a.1; WBGene00000778.
D1069.2a.2; D1069.2a.2; WBGene00000778.
GeneIDi173424.
KEGGicel:CELE_D1069.2.
UCSCiD1069.2.1. c. elegans.

Organism-specific databases

CTDi173424.
WormBaseiD1069.2a; CE38495; WBGene00000778; cpn-2.

Phylogenomic databases

eggNOGiKOG2046. Eukaryota.
COG5199. LUCA.
HOGENOMiHOG000232113.
InParanoidiO44788.
OMAiKKNDARF.
OrthoDBiEOG73Z2VM.

Gene expression databases

ExpressionAtlasiO44788. baseline.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR000557. Calponin_repeat.
IPR001715. CH-domain.
IPR003096. SM22_calponin.
[Graphical view]
PfamiPF00402. Calponin. 1 hit.
PF00307. CH. 1 hit.
[Graphical view]
PRINTSiPR00888. SM22CALPONIN.
SMARTiSM00033. CH. 1 hit.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS01052. CALPONIN_1. 1 hit.
PS51122. CALPONIN_2. 1 hit.
PS50021. CH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO44788_CAEEL
AccessioniPrimary (citable) accession number: O44788
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: January 25, 2012
Last modified: June 8, 2016
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.