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Protein
Submitted name:

Yeast PRP (Splicing factor) related

Gene

prp-17

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-109688. Cleavage of Growing Transcript in the Termination Region.
R-CEL-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72187. mRNA 3'-end processing.
SignaLinkiO44729.

Names & Taxonomyi

Protein namesi
Submitted name:
Yeast PRP (Splicing factor) relatedImported
Gene namesi
Name:prp-17Imported
ORF Names:CELE_F49D11.1Imported, F49D11.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF49D11.1; CE28405; WBGene00018625; prp-17.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiO44729.
PaxDbiO44729.
PRIDEiO44729.

Interactioni

Protein-protein interaction databases

STRINGi6239.F49D11.1.

Structurei

3D structure databases

ProteinModelPortaliO44729.
SMRiO44729. Positions 268-567.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini271 – 567297WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0282. Eukaryota.
ENOG410XP87. LUCA.
GeneTreeiENSGT00530000063583.
HOGENOMiHOG000214672.
InParanoidiO44729.
KOiK12816.
OMAiHTYRGHN.
OrthoDBiEOG7KM5S8.
PhylomeDBiO44729.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR032847. PRPF17.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR22847:SF474. PTHR22847:SF474. 2 hits.
PfamiPF00400. WD40. 5 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O44729-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALQAYGGS DSEHSDDDAS MDQVAKGKSS TLLERAIVTA PDVESKSAIR
60 70 80 90 100
QVAIVDPKTK EIKSNPKFDQ LFKPESGPVN HFKSEQQRSQ KNTLTGFVEP
110 120 130 140 150
AHLNEFHFNR QIRSFDTLGY AQNPTAESGT THFVGDVKKA EAEKGVSLFE
160 170 180 190 200
SKKTGGEKRK RVRNDDSADI DGYTGPWSRF IDEKTVAKPT PELQKQMDEI
210 220 230 240 250
VKKRQEKSRR FKKEKEDSEQ MAEESSTLHL KEAEDYQGRS FLVPPSFTGV
260 270 280 290 300
NLREDYVPER CFVPKKLVHT YRGHNKGVNF LQWFPKSAHL FLSCSMDTKI
310 320 330 340 350
KLWEVYDRQR VVRTYAGHKL PVREVAFNNE GTEFLSASFD RYVKLWDTET
360 370 380 390 400
GQVKQRFHTG HVPYCLKYHP DDDKNHMFLV GMQNKKIIQW DSRSGEIVQE
410 420 430 440 450
YDRHLQAVNS ITFFDKNRRF ASTSDDKSVR IWEWEIPVDT KLIQNVGLHA
460 470 480 490 500
IPTMTKSPND KWVVGQCMDN RIVLFQLVDD KLRFSKKKAF RGHNAAGYAC
510 520 530 540 550
NIDFSPDQSF LISGDADGKL FIWDWRTHKI VGKWKAHDST CIAALWHPHE
560
KSRMITAGWD GLIKMWN
Length:567
Mass (Da):65,278
Last modified:October 1, 2001 - v2
Checksum:i8C87B8E61144FAA8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD71532.1.
PIRiT37202.
RefSeqiNP_492851.1. NM_060450.4.
UniGeneiCel.5883.

Genome annotation databases

EnsemblMetazoaiF49D11.1; F49D11.1; WBGene00018625.
GeneIDi172999.
KEGGicel:CELE_F49D11.1.
UCSCiF49D11.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD71532.1.
PIRiT37202.
RefSeqiNP_492851.1. NM_060450.4.
UniGeneiCel.5883.

3D structure databases

ProteinModelPortaliO44729.
SMRiO44729. Positions 268-567.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F49D11.1.

Proteomic databases

EPDiO44729.
PaxDbiO44729.
PRIDEiO44729.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF49D11.1; F49D11.1; WBGene00018625.
GeneIDi172999.
KEGGicel:CELE_F49D11.1.
UCSCiF49D11.1. c. elegans.

Organism-specific databases

CTDi172999.
WormBaseiF49D11.1; CE28405; WBGene00018625; prp-17.

Phylogenomic databases

eggNOGiKOG0282. Eukaryota.
ENOG410XP87. LUCA.
GeneTreeiENSGT00530000063583.
HOGENOMiHOG000214672.
InParanoidiO44729.
KOiK12816.
OMAiHTYRGHN.
OrthoDBiEOG7KM5S8.
PhylomeDBiO44729.

Enzyme and pathway databases

ReactomeiR-CEL-109688. Cleavage of Growing Transcript in the Termination Region.
R-CEL-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72187. mRNA 3'-end processing.
SignaLinkiO44729.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR032847. PRPF17.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR22847:SF474. PTHR22847:SF474. 2 hits.
PfamiPF00400. WD40. 5 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO44729_CAEEL
AccessioniPrimary (citable) accession number: O44729
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: October 1, 2001
Last modified: June 8, 2016
This is version 135 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.