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Protein
Submitted name:

Yeast PRP (Splicing factor) related

Gene

prp-17

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-CEL-109688 Cleavage of Growing Transcript in the Termination Region
R-CEL-159236 Transport of Mature mRNA derived from an Intron-Containing Transcript
R-CEL-72163 mRNA Splicing - Major Pathway
R-CEL-72187 mRNA 3'-end processing
SignaLinkiO44729

Names & Taxonomyi

Protein namesi
Submitted name:
Yeast PRP (Splicing factor) relatedImported
Gene namesi
Name:prp-17Imported
ORF Names:CELE_F49D11.1Imported, F49D11.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF49D11.1 ; CE28405 ; WBGene00018625 ; prp-17

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiO44729
PaxDbiO44729
PeptideAtlasiO44729

Expressioni

Gene expression databases

BgeeiWBGene00018625

Interactioni

Protein-protein interaction databases

STRINGi6239.F49D11.1

Structurei

3D structure databases

ProteinModelPortaliO44729
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini271 – 567WD_REPEATS_REGIONInterPro annotationAdd BLAST297
Repeati271 – 313WDPROSITE-ProRule annotationAdd BLAST43
Repeati315 – 356WDPROSITE-ProRule annotationAdd BLAST42
Repeati401 – 433WDPROSITE-ProRule annotationAdd BLAST33
Repeati502 – 533WDPROSITE-ProRule annotationAdd BLAST32
Repeati534 – 567WDPROSITE-ProRule annotationAdd BLAST34

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0282 Eukaryota
ENOG410XP87 LUCA
GeneTreeiENSGT00530000063583
HOGENOMiHOG000214672
InParanoidiO44729
KOiK12816
OMAiCIHTWTG
OrthoDBiEOG091G03TK
PhylomeDBiO44729

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR032847 PRPF17
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR43979 PTHR43979, 1 hit
PfamiView protein in Pfam
PF00400 WD40, 5 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 6 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 5 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

O44729-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALQAYGGS DSEHSDDDAS MDQVAKGKSS TLLERAIVTA PDVESKSAIR
60 70 80 90 100
QVAIVDPKTK EIKSNPKFDQ LFKPESGPVN HFKSEQQRSQ KNTLTGFVEP
110 120 130 140 150
AHLNEFHFNR QIRSFDTLGY AQNPTAESGT THFVGDVKKA EAEKGVSLFE
160 170 180 190 200
SKKTGGEKRK RVRNDDSADI DGYTGPWSRF IDEKTVAKPT PELQKQMDEI
210 220 230 240 250
VKKRQEKSRR FKKEKEDSEQ MAEESSTLHL KEAEDYQGRS FLVPPSFTGV
260 270 280 290 300
NLREDYVPER CFVPKKLVHT YRGHNKGVNF LQWFPKSAHL FLSCSMDTKI
310 320 330 340 350
KLWEVYDRQR VVRTYAGHKL PVREVAFNNE GTEFLSASFD RYVKLWDTET
360 370 380 390 400
GQVKQRFHTG HVPYCLKYHP DDDKNHMFLV GMQNKKIIQW DSRSGEIVQE
410 420 430 440 450
YDRHLQAVNS ITFFDKNRRF ASTSDDKSVR IWEWEIPVDT KLIQNVGLHA
460 470 480 490 500
IPTMTKSPND KWVVGQCMDN RIVLFQLVDD KLRFSKKKAF RGHNAAGYAC
510 520 530 540 550
NIDFSPDQSF LISGDADGKL FIWDWRTHKI VGKWKAHDST CIAALWHPHE
560
KSRMITAGWD GLIKMWN
Length:567
Mass (Da):65,278
Last modified:October 1, 2001 - v2
Checksum:i8C87B8E61144FAA8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CCD71532.1
PIRiT37202
RefSeqiNP_492851.1, NM_060450.4
UniGeneiCel.5883

Genome annotation databases

EnsemblMetazoaiF49D11.1.1; F49D11.1.1; WBGene00018625
F49D11.1.2; F49D11.1.2; WBGene00018625
GeneIDi172999
KEGGicel:CELE_F49D11.1
UCSCiF49D11.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiO44729_CAEEL
AccessioniPrimary (citable) accession number: O44729
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: October 1, 2001
Last modified: March 28, 2018
This is version 150 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health