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Protein
Submitted name:

Yeast PRP (Splicing factor) related

Gene

prp-17

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-CEL-109688. Cleavage of Growing Transcript in the Termination Region.
R-CEL-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72187. mRNA 3'-end processing.
SignaLinkiO44729.

Names & Taxonomyi

Protein namesi
Submitted name:
Yeast PRP (Splicing factor) relatedImported
Gene namesi
Name:prp-17Imported
ORF Names:CELE_F49D11.1Imported, F49D11.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF49D11.1; CE28405; WBGene00018625; prp-17.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

EPDiO44729.
PaxDbiO44729.
PeptideAtlasiO44729.

Expressioni

Gene expression databases

BgeeiWBGene00018625.

Interactioni

Protein-protein interaction databases

STRINGi6239.F49D11.1.

Structurei

3D structure databases

ProteinModelPortaliO44729.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini271 – 567WD_REPEATS_REGIONInterPro annotationAdd BLAST297
Repeati271 – 313WDPROSITE-ProRule annotationAdd BLAST43
Repeati315 – 356WDPROSITE-ProRule annotationAdd BLAST42
Repeati401 – 433WDPROSITE-ProRule annotationAdd BLAST33
Repeati502 – 533WDPROSITE-ProRule annotationAdd BLAST32
Repeati534 – 567WDPROSITE-ProRule annotationAdd BLAST34

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0282. Eukaryota.
ENOG410XP87. LUCA.
GeneTreeiENSGT00530000063583.
HOGENOMiHOG000214672.
InParanoidiO44729.
KOiK12816.
OMAiPIKYIAE.
OrthoDBiEOG091G03TK.
PhylomeDBiO44729.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR032847. PRPF17.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
PANTHERiPTHR22847:SF505. PTHR22847:SF505. 1 hit.
PfamiView protein in Pfam
PF00400. WD40. 5 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 6 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

O44729-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALQAYGGS DSEHSDDDAS MDQVAKGKSS TLLERAIVTA PDVESKSAIR
60 70 80 90 100
QVAIVDPKTK EIKSNPKFDQ LFKPESGPVN HFKSEQQRSQ KNTLTGFVEP
110 120 130 140 150
AHLNEFHFNR QIRSFDTLGY AQNPTAESGT THFVGDVKKA EAEKGVSLFE
160 170 180 190 200
SKKTGGEKRK RVRNDDSADI DGYTGPWSRF IDEKTVAKPT PELQKQMDEI
210 220 230 240 250
VKKRQEKSRR FKKEKEDSEQ MAEESSTLHL KEAEDYQGRS FLVPPSFTGV
260 270 280 290 300
NLREDYVPER CFVPKKLVHT YRGHNKGVNF LQWFPKSAHL FLSCSMDTKI
310 320 330 340 350
KLWEVYDRQR VVRTYAGHKL PVREVAFNNE GTEFLSASFD RYVKLWDTET
360 370 380 390 400
GQVKQRFHTG HVPYCLKYHP DDDKNHMFLV GMQNKKIIQW DSRSGEIVQE
410 420 430 440 450
YDRHLQAVNS ITFFDKNRRF ASTSDDKSVR IWEWEIPVDT KLIQNVGLHA
460 470 480 490 500
IPTMTKSPND KWVVGQCMDN RIVLFQLVDD KLRFSKKKAF RGHNAAGYAC
510 520 530 540 550
NIDFSPDQSF LISGDADGKL FIWDWRTHKI VGKWKAHDST CIAALWHPHE
560
KSRMITAGWD GLIKMWN
Length:567
Mass (Da):65,278
Last modified:October 1, 2001 - v2
Checksum:i8C87B8E61144FAA8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD71532.1.
PIRiT37202.
RefSeqiNP_492851.1. NM_060450.4.
UniGeneiCel.5883.

Genome annotation databases

EnsemblMetazoaiF49D11.1; F49D11.1; WBGene00018625.
GeneIDi172999.
KEGGicel:CELE_F49D11.1.
UCSCiF49D11.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiO44729_CAEEL
AccessioniPrimary (citable) accession number: O44729
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: October 1, 2001
Last modified: June 7, 2017
This is version 145 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported