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Protein
Submitted name:

Prion-like-(Q/N-rich)-domain-bearing protein

Gene

pqn-54

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

PrionImported

Names & Taxonomyi

Protein namesi
Submitted name:
Prion-like-(Q/N-rich)-domain-bearing proteinImported
Gene namesi
Name:pqn-54Imported
ORF Names:CELE_R09B5.5Imported, R09B5.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiR09B5.5; CE12626; WBGene00004139; pqn-54.

Subcellular locationi

Keywords - Cellular componenti

Amyloid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 388369Sequence analysisPRO_5004158372Add
BLAST

Proteomic databases

PaxDbiO44606.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
sgt-1Q217463EBI-325936,EBI-312019

Protein-protein interaction databases

DIPiDIP-25031N.
IntActiO44606. 26 interactions.
MINTiMINT-1038880.
STRINGi6239.R09B5.5.

Structurei

3D structure databases

ProteinModelPortaliO44606.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410K8ZX. Eukaryota.
ENOG4110JUS. LUCA.
GeneTreeiENSGT00700000104617.
HOGENOMiHOG000018610.
OMAiQVVHIQL.
PhylomeDBiO44606.

Sequencei

Sequence statusi: Complete.

O44606-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFTSLAIAF FACALVVSGN VLREKRQCGC AQPQQSQCSC QQVQQTQSCS
60 70 80 90 100
CQSAPVQQQS PSCSCAQPQQ TQNVQVQTTQ CAPACQQSCT QQCQAAPSVA
110 120 130 140 150
QCQPQCQQQC QSQCAPMYNP PATTTPAPVV QCQPMCQQQC QSTCVQQQQP
160 170 180 190 200
ASQCQPQCQQ QCNVACDAPA TSTQAPQVVH IQLEIQQAQA QCQPQCQQQC
210 220 230 240 250
QSSCTQQQQP ANQCNSACNS QCSNICQQTA QATQQVYNQN SNTNTQMYNP
260 270 280 290 300
YNNNNQGSGS ANCAPACQPA CDNSCTSQTP APMYNPYDAS TSAPASSQAV
310 320 330 340 350
IQIVLQSSVA QSSQCTPQCE QSCQQQCVQQ QQPAAQCQSA CQDSCSSSCQ
360 370 380
AAQPATTACQ QSPQSPQNSC SCQANYSPCG NGQCCRRK
Length:388
Mass (Da):41,440
Last modified:June 1, 1998 - v1
Checksum:iEA9C34AA4EABFE46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CCD68881.1.
PIRiA88949.
RefSeqiNP_503423.1. NM_071022.5.
UniGeneiCel.2829.

Genome annotation databases

EnsemblMetazoaiR09B5.5; R09B5.5; WBGene00004139.
GeneIDi187728.
KEGGicel:CELE_R09B5.5.
UCSCiR09B5.5. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CCD68881.1.
PIRiA88949.
RefSeqiNP_503423.1. NM_071022.5.
UniGeneiCel.2829.

3D structure databases

ProteinModelPortaliO44606.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25031N.
IntActiO44606. 26 interactions.
MINTiMINT-1038880.
STRINGi6239.R09B5.5.

Proteomic databases

PaxDbiO44606.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiR09B5.5; R09B5.5; WBGene00004139.
GeneIDi187728.
KEGGicel:CELE_R09B5.5.
UCSCiR09B5.5. c. elegans.

Organism-specific databases

CTDi187728.
WormBaseiR09B5.5; CE12626; WBGene00004139; pqn-54.

Phylogenomic databases

eggNOGiENOG410K8ZX. Eukaryota.
ENOG4110JUS. LUCA.
GeneTreeiENSGT00700000104617.
HOGENOMiHOG000018610.
OMAiQVVHIQL.
PhylomeDBiO44606.

Miscellaneous databases

NextBioi936286.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO44606_CAEEL
AccessioniPrimary (citable) accession number: O44606
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.