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Protein

60S ribosomal protein L18a

Gene

rpl-20

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18a
Gene namesi
Name:rpl-20
ORF Names:E04A4.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiE04A4.8; CE21392; WBGene00004432; rpl-20.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139311 – 18060S ribosomal protein L18aAdd BLAST180

Proteomic databases

EPDiO44480.
PaxDbiO44480.
PeptideAtlasiO44480.
PRIDEiO44480.

Expressioni

Gene expression databases

BgeeiWBGene00004432.

Interactioni

Protein-protein interaction databases

MINTiMINT-1093825.
STRINGi6239.E04A4.8.1.

Structurei

3D structure databases

ProteinModelPortaliO44480.
SMRiO44480.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0829. Eukaryota.
COG2157. LUCA.
GeneTreeiENSGT00390000015797.
HOGENOMiHOG000211377.
InParanoidiO44480.
KOiK02882.
OMAiCRRPAIK.
OrthoDBiEOG091G0LX4.
PhylomeDBiO44480.

Family and domain databases

HAMAPiMF_00273. Ribosomal_L18Ae. 1 hit.
InterProiView protein in InterPro
IPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
IPR023573. Ribosomal_L18a//L18Ae/LX.
IPR021138. Ribosomal_L18a/L20_eukaryotes.
PfamiView protein in Pfam
PF01775. Ribosomal_L18A. 1 hit.
PIRSFiPIRSF002190. Ribosomal_L18a. 1 hit.

Sequencei

Sequence statusi: Complete.

O44480-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTKALGETL NEYVVVGRKI PTEKEPVTPI WKMQIFATNH VIAKSRFWYF
60 70 80 90 100
VSMLRRVKKA NGEILSIKQV FEKNPGTVKN YGVWLKYDSR TGHHNMYREY
110 120 130 140 150
RDTTVAGAVT QCYRDMGARH RAQADRIHIL KVQTVKAEDT KRAGIKMFHD
160 170 180
AKIRFPLPHR VTKRKNLSVF TTARQNTHFA
Length:180
Mass (Da):20,959
Last modified:October 1, 2001 - v2
Checksum:i26AD410B87195C3F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081039 Genomic DNA. Translation: CCD68709.1.
PIRiB88677.
T32612.
RefSeqiNP_001294214.1. NM_001307285.1.

Genome annotation databases

EnsemblMetazoaiE04A4.8; E04A4.8; WBGene00004432.
GeneIDi24104384.
KEGGicel:CELE_E04A4.8.
UCSCiE04A4.8.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081039 Genomic DNA. Translation: CCD68709.1.
PIRiB88677.
T32612.
RefSeqiNP_001294214.1. NM_001307285.1.

3D structure databases

ProteinModelPortaliO44480.
SMRiO44480.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1093825.
STRINGi6239.E04A4.8.1.

Proteomic databases

EPDiO44480.
PaxDbiO44480.
PeptideAtlasiO44480.
PRIDEiO44480.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiE04A4.8; E04A4.8; WBGene00004432.
GeneIDi24104384.
KEGGicel:CELE_E04A4.8.
UCSCiE04A4.8.1. c. elegans.

Organism-specific databases

CTDi24104384.
WormBaseiE04A4.8; CE21392; WBGene00004432; rpl-20.

Phylogenomic databases

eggNOGiKOG0829. Eukaryota.
COG2157. LUCA.
GeneTreeiENSGT00390000015797.
HOGENOMiHOG000211377.
InParanoidiO44480.
KOiK02882.
OMAiCRRPAIK.
OrthoDBiEOG091G0LX4.
PhylomeDBiO44480.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:O44480.

Gene expression databases

BgeeiWBGene00004432.

Family and domain databases

HAMAPiMF_00273. Ribosomal_L18Ae. 1 hit.
InterProiView protein in InterPro
IPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
IPR023573. Ribosomal_L18a//L18Ae/LX.
IPR021138. Ribosomal_L18a/L20_eukaryotes.
PfamiView protein in Pfam
PF01775. Ribosomal_L18A. 1 hit.
PIRSFiPIRSF002190. Ribosomal_L18a. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL18A_CAEEL
AccessioniPrimary (citable) accession number: O44480
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: October 1, 2001
Last modified: April 12, 2017
This is version 108 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.