O43918 (AIRE_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Autoimmune regulator

Alternative name(s):
Autoimmune polyendocrinopathy candidiasis ectodermal dystrophy protein
Short name=APECED protein

Gene names

Name:	AIRE
Synonyms:	APECED

Organism

Homo sapiens (Human) [Reference proteome]

Taxonomic identifier

9606 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	545 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Transcriptional regulator that binds to DNA as a dimer or as a tetramer, but not as a monomer. Binds to G-doublets in an A/T-rich environment; the preferred motif is a tandem repeat of 5'-. ATTGGTTA-3' combined with a 5'-TTATTA-3' box. Binds to nucleosomes By similarity. Binds to chromatin and interacts selectively with histone H3 that is not methylated at 'Lys-4', not phosphorylated at 'Thr-3' and not methylated at 'Arg-2'. Functions as a sensor of histone H3 modifications that are important for the epigenetic regulation of gene expression. Functions as a transcriptional activator and promotes the expression of otherwise tissue-specific self-antigens in the thymus, which is important for self tolerance and the avoidance of autoimmune reactions. Ref.12
Subunit structure	Homodimer and homotetramer. Interacts with CREBBP. Interacts preferentially with histone H3 that is not methylated at 'Lys-4'. Binds with lower affinity to histone H3 that is monomethylated at 'Lys-4'. Trimethylation of histone H3 at 'Lys-4' or phosphorylation at 'Thr-3' abolish the interaction. Binds with lower affinity to histone H3 that is acetylated at 'Lys-4', or that is acetylated at 'Lys-9' or trimethylated at 'Lys-9'. Binds histone H3 that is dimethylated at 'Arg-2' with very low affinity. Ref.8 Ref.12 Ref.14
Subcellular location	Nucleus. Cytoplasm. Note: Associated with tubular structures and in discrete nuclear dots resembling ND10 nuclear bodies. May shuttle between nucleus and cytoplasm. Ref.7 Ref.9 Ref.10 Ref.11
Tissue specificity	Widely expressed. Expressed at higher level in thymus (medullary epithelial cells and monocyte-dendritic cells), pancreas, adrenal cortex and testis. Expressed at lower level in the spleen, fetal liver and lymph nodes. Isoform 2 and isoform 3 seem to be less frequently expressed than isoform 1, if at all.
Domain	The L-X-X-L-L repeats may be implicated in binding to nuclear receptors. The HSR domain is required for localization on tubular structures (N-terminal part) and for homodimerization. Interacts via the first PHD domain with the N-terminus of histone H3 that is not methylated at 'Lys-4'. Disruption of the first PHD domain has been shown to lead to reduced transcriptional activity and to localization of the protein mainly in the cytoplasm in small granules. While the PHD zinc fingers are necessary for the transactivation capacity of the protein, other regions also modulate this function.
Post-translational modification	Phosphorylated. Phosphorylation could trigger oligomerization. Ref.8
Involvement in disease	Autoimmune polyendocrine syndrome 1 (APS1) [MIM:240300]: A rare disease characterized by the combination of chronic mucocutaneous candidiasis, hypoparathyroidism and Addison disease. Symptoms of mucocutaneous candidiasis manifest first, followed by hypotension or fatigue occurring as a result of Addison disease. APS1 is associated with other autoimmune disorders including diabetes mellitus, vitiligo, alopecia, hepatitis, pernicious anemia and primary hypothyroidism. Note: The disease is caused by mutations affecting the gene represented in this entry. Ref.1 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.15 Ref.16 Ref.18 Ref.19 Ref.20 Ref.21 Ref.22 Ref.23 Ref.24 Ref.25 Ref.26 Ref.27 Most of the mutations alter the nucleus-cytoplasm distribution of AIRE and disturb its association with nuclear dots and cytoplasmic filaments. Most of the mutations also decrease transactivation of the protein. The HSR domain is responsible for the homomultimerization activity of AIRE. All the missense mutations of the HSR and the SAND domains decrease this activity, but those in other domains do not. The AIRE protein is present in soluble high-molecular-weight complexes. Mutations in the HSR domain and deletion of PHD zinc fingers disturb the formation of these complexes.
Sequence similarities	Contains 1 HSR domain. Contains 2 PHD-type zinc fingers. Contains 1 SAND domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Cytoplasm Nucleus
Coding sequence diversity	Alternative splicing Polymorphism
Disease	Disease mutation
Domain	Repeat Zinc-finger
Ligand	DNA-binding Metal-binding Zinc
Molecular function	Activator
PTM	Phosphoprotein
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
Biological_process	humoral immune response Inferred from electronic annotation. Source: Compara immune response Traceable author statement Ref.2. Source: ProtInc positive regulation of transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: Compara positive regulation of transcription, DNA-dependent Inferred from direct assay Ref.12. Source: UniProtKB regulation of translation Inferred from electronic annotation. Source: GOC transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	actin cytoskeleton Inferred from direct assay. Source: HPA cytoplasm Inferred from direct assay. Source: HPA nucleus Non-traceable author statement Ref.2. Source: UniProtKB plasma membrane Inferred from direct assay. Source: HPA
Molecular_function	chromatin binding Inferred from direct assay Ref.12. Source: UniProtKB histone binding Inferred from direct assay Ref.12Ref.15. Source: UniProtKB transcription regulatory region DNA binding Inferred from direct assay Ref.12. Source: UniProtKB translation regulator activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from direct assay Ref.15. Source: UniProtKB
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
DAXX	Q9UER7	5	EBI-1753081,EBI-77321
NCK1	P16333	2	EBI-1753081,EBI-389883
PRKDC	P78527	2	EBI-1753081,EBI-352053

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]

Note: Additional isoforms seem to exist. Experimental confirmation may be lacking for some isoforms.

Isoform 1 (identifier: O43918-1)

Also known as: AIRE-1;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Isoform 2 (identifier: O43918-2)

Also known as: AIRE-2;

The sequence of this isoform differs from the canonical sequence as follows:
     1-292: MATDAALRRL...LALPSDPQLH → MWLVYSSGAP...VALRRVLHPS

Isoform 3 (identifier: O43918-3)

Also known as: AIRE-3;

The sequence of this isoform differs from the canonical sequence as follows:
     1-292: MATDAALRRL...LALPSDPQLH → MWLVYSSGAP...VALRRVLHPS
     377-545: VRGPPGEPLA...MARPAAPFPS → PRCQGWTPRP...ACAADPAQET

Isoform 4 (identifier: O43918-4)

The sequence of this isoform differs from the canonical sequence as follows:
     1-292: MATDAALRRL...LALPSDPQLH → MWLVYSSGAP...VALRRVLHPS
     293-293: Q → PVCMGVSCLCQ

Note: No experimental confirmation available.

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 545

545

Autoimmune regulator

PRO_0000064513

Regions

Domain

1 – 105

105

HSR

Domain

181 – 280

100

SAND

Zinc finger

296 – 343

48

PHD-type 1

Zinc finger

434 – 475

42

PHD-type 2

Region

295 – 298

4

Interaction with histone H3 not methylated at 'Lys-4'

Region

304 – 312

9

Interaction with histone H3 not methylated at 'Lys-4'

Region

331 – 335

5

Interaction with histone H3 not methylated at 'Lys-4'

Motif

7 – 11

5

LXXLL motif 1

Motif

63 – 67

5

LXXLL motif 2

Motif

414 – 418

5

LXXLL motif 3

Motif

516 – 520

5

LXXLL motif 4

Natural variations

Alternative sequence

1 – 292

292

MATDA…DPQLH → MWLVYSSGAPGTQQPARNRV FFPIGMAPGGVCWRPDGWGT GGQGRISGPGSMGAGQRLGS SGTQRCCWGSCFGKEVALRR VLHPS in isoform 2, isoform 3 and isoform 4.

VSP_004089

Alternative sequence

293

1

Q → PVCMGVSCLCQ in isoform 4.

VSP_043529

Alternative sequence

377 – 545

169

VRGPP…APFPS → PRCQGWTPRPCTPYCVWVLR VSRTWLLVRVAGCAEMVRTC CGVLTAPLPSTGAATSQPAP PGPGRACAADPAQET in isoform 3.

VSP_004090

Natural variant

15

1

R → C in APS1. Ref.23
Corresponds to variant rs179363875 [ dbSNP | Ensembl ].

VAR_026480

Natural variant

15

1

R → L in APS1; enzymatic activity of approximately 30% of that of the wild-type. Ref.11 Ref.19 Ref.26
Corresponds to variant rs179363876 [ dbSNP | Ensembl ].

VAR_013713

Natural variant

16

1

T → M in APS1; enzymatic activity of approximately 10% of that of the wild-type. Ref.11 Ref.19 Ref.20 Ref.26
Corresponds to variant rs179363877 [ dbSNP | Ensembl ].

VAR_013714

Natural variant

21

1

A → V in APS1. Ref.11 Ref.25
Corresponds to variant rs179363886 [ dbSNP | Ensembl ].

VAR_026481

Natural variant

22 – 23

2

Missing in APS1; lack of alpha-galactosidase enzymatic activity; lack of homodimerization.

VAR_026482

Natural variant

28

1

L → P in APS1; abolishes association with cytoplasmic tubular structures and homodimerization. Ref.10 Ref.11 Ref.16 Ref.19
Corresponds to variant rs179363878 [ dbSNP | Ensembl ].

VAR_005004

Natural variant

29

1

L → P in APS1. Ref.11 Ref.22
Corresponds to variant rs179363879 [ dbSNP | Ensembl ].

VAR_013715

Natural variant

77

1

F → S in APS1; lack of alpha-galactosidase enzymatic activity; lack of homodimerization. Ref.26
Corresponds to variant rs179363887 [ dbSNP | Ensembl ].

VAR_026483

Natural variant

78

1

W → R in APS1; lack of alpha-galactosidase enzymatic activity; lack of homodimerization. Ref.11 Ref.19 Ref.20 Ref.24 Ref.26
Corresponds to variant rs179363880 [ dbSNP | Ensembl ].

VAR_013716

Natural variant

80

1

V → L in APS1. Ref.9 Ref.11 Ref.19
Corresponds to variant rs179363881 [ dbSNP | Ensembl ].

VAR_013717

Natural variant

83

1

K → E in APS1. Ref.1 Ref.11 Ref.19

VAR_005005

Natural variant

85

1

Y → C in APS1. Ref.9 Ref.19 Ref.25
Corresponds to variant rs179363882 [ dbSNP | Ensembl ].

VAR_013718

Natural variant

90

1

Y → C in APS1. Ref.11 Ref.19
Corresponds to variant rs179363883 [ dbSNP | Ensembl ].

VAR_013719

Natural variant

93

1

L → R in APS1. Ref.11 Ref.19
Corresponds to variant rs179363884 [ dbSNP | Ensembl ].

VAR_013720

Natural variant

228

1

G → W in APS1; changes the subcellular localization and in addition disrupts the transactivating capacity of the wild-type AIRE; acts with a dominant negative effect by binding to the wild-type AIRE thus preventing the protein from forming the complexes needed for transactivation. Ref.11 Ref.21 Ref.27

VAR_014422

Natural variant

252

1

P → L in APS1. Ref.24
Corresponds to variant rs34397615 [ dbSNP | Ensembl ].

VAR_026484

Natural variant

278

1

S → R. Ref.17 Ref.19 Ref.23
Corresponds to variant rs1800520 [ dbSNP | Ensembl ].

VAR_005006

Natural variant

301

1

V → M in APS1; no effect on protein structure or on interaction with histone H3. Ref.12 Ref.13 Ref.15 Ref.19

VAR_013721

Natural variant

305

1

G → S.

VAR_013722

Natural variant

311

1

C → Y in APS1; impairs zinc binding and folding of the PHD-type 1 zinc finger. Ref.9 Ref.12 Ref.13 Ref.15 Ref.19 Ref.25

VAR_013723

Natural variant

326

1

P → L in APS1; no significant effect on structure, but may alter protein interactions. Ref.15 Ref.18
Corresponds to variant rs179363888 [ dbSNP | Ensembl ].

VAR_026485

Natural variant

326

1

P → Q in APS1; alters folding of the PHD-type 1 zinc finger. Ref.9 Ref.11 Ref.13 Ref.15 Ref.19
Corresponds to variant rs179363885 [ dbSNP | Ensembl ].

VAR_013724

Natural variant

539

1

P → L in APS1. Ref.24
Corresponds to variant rs179363889 [ dbSNP | Ensembl ].

VAR_026486

Experimental info

Mutagenesis

295

1

N → A: Abolishes interaction with histone H3. Ref.14

Mutagenesis

297

1

D → A: Strongly reduces interaction with unmethylated histone H3 and abolishes interaction with histone H3 trimethylated at 'Lys-4'. Ref.12

Mutagenesis

298

1

E → A: Reduces interaction with histone H3. Ref.14

Mutagenesis

302

1

C → P: Reduces transcriptional activation. Ref.10

Mutagenesis

303

1

R → P: Alters protein folding and abolishes interaction with histone H3. Ref.14

Mutagenesis

304

1

D → A: Strongly reduces interaction with histone H3. Ref.14

Mutagenesis

307

1

E → A: Reduces interaction with histone H3. Ref.14

Mutagenesis

312

1

D → A: Abolishes interaction with histone H3. Ref.12

Mutagenesis

437

1

C → P: Reduces transcription activation. Ref.10

Sequence conflict

437 – 467

31

CGDGT…TSRPG → W in CAA08759. Ref.3

Secondary structure

1

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545

Helix Strand Turn

Details...

Beta strand

298 – 303

6

Beta strand

306 – 310

5

Beta strand

312 – 314

3

Beta strand

317 – 319

3

Turn

320 – 322

3

Beta strand

323 – 325

3

Helix

338 – 342

5

Turn

423 – 426

4

Turn

435 – 437

3

Beta strand

447 – 449

3

Helix

455 – 458

4

Turn

460 – 462

3

Beta strand

467 – 469

3

Turn

473 – 476

4

Sequences

	Sequence		Length	Mass (Da)
	Isoform 1 (AIRE-1) [UniParc]. Last modified June 1, 1998. Version 1. Checksum: 8CF703F8C9411BC5	FASTA	545	57,727
	10 20 30 40 50 60 MATDAALRRL LRLHRTEIAV AVDSAFPLLH ALADHDVVPE DKFQETLHLK EKEGCPQAFH 70 80 90 100 110 120 ALLSWLLTQD STAILDFWRV LFKDYNLERY GRLQPILDSF PKDVDLSQPR KGRKPPAVPK 130 140 150 160 170 180 ALVPPPRLPT KRKASEEARA AAPAALTPRG TASPGSQLKA KPPKKPESSA EQQRLPLGNG 190 200 210 220 230 240 IQTMSASVQR AVAMSSGDVP GARGAVEGIL IQQVFESGGS KKCIQVGGEF YTPSKFEDSG 250 260 270 280 290 300 SGKNKARSSS GPKPLVRAKG AQGAAPGGGE ARLGQQGSVP APLALPSDPQ LHQKNEDECA 310 320 330 340 350 360 VCRDGGELIC CDGCPRAFHL ACLSPPLREI PSGTWRCSSC LQATVQEVQP RAEEPRPQEP 370 380 390 400 410 420 PVETPLPPGL RSAGEEVRGP PGEPLAGMDT TLVYKHLPAP PSAAPLPGLD SSALHPLLCV 430 440 450 460 470 480 GPEGQQNLAP GARCGVCGDG TDVLRCTHCA AAFHWRCHFP AGTSRPGTGL RCRSCSGDVT 490 500 510 520 530 540 PAPVEGVLAP SPARLAPGPA KDDTASHEPA LHRDDLESLL SEHTFDGILQ WAIQSMARPA APFPS
	Isoform 2 (AIRE-2) [UniParc]. Checksum: 7C99ABAD92DDC565	FASTA	338	35,507
	10 20 30 40 50 60 MWLVYSSGAP GTQQPARNRV FFPIGMAPGG VCWRPDGWGT GGQGRISGPG SMGAGQRLGS 70 80 90 100 110 120 SGTQRCCWGS CFGKEVALRR VLHPSQKNED ECAVCRDGGE LICCDGCPRA FHLACLSPPL 130 140 150 160 170 180 REIPSGTWRC SSCLQATVQE VQPRAEEPRP QEPPVETPLP PGLRSAGEEV RGPPGEPLAG 190 200 210 220 230 240 MDTTLVYKHL PAPPSAAPLP GLDSSALHPL LCVGPEGQQN LAPGARCGVC GDGTDVLRCT 250 260 270 280 290 300 HCAAAFHWRC HFPAGTSRPG TGLRCRSCSG DVTPAPVEGV LAPSPARLAP GPAKDDTASH 310 320 330 EPALHRDDLE SLLSEHTFDG ILQWAIQSMA RPAAPFPS
	Isoform 3 (AIRE-3) [UniParc]. Checksum: BD26FC231E0E5611	FASTA	244	25,927
	10 20 30 40 50 60 MWLVYSSGAP GTQQPARNRV FFPIGMAPGG VCWRPDGWGT GGQGRISGPG SMGAGQRLGS 70 80 90 100 110 120 SGTQRCCWGS CFGKEVALRR VLHPSQKNED ECAVCRDGGE LICCDGCPRA FHLACLSPPL 130 140 150 160 170 180 REIPSGTWRC SSCLQATVQE VQPRAEEPRP QEPPVETPLP PGLRSAGEEP RCQGWTPRPC 190 200 210 220 230 240 TPYCVWVLRV SRTWLLVRVA GCAEMVRTCC GVLTAPLPST GAATSQPAPP GPGRACAADP AQET
	Isoform 4 [UniParc]. Checksum: 37045012FF585F6E	FASTA	348	36,501
	10 20 30 40 50 60 MWLVYSSGAP GTQQPARNRV FFPIGMAPGG VCWRPDGWGT GGQGRISGPG SMGAGQRLGS 70 80 90 100 110 120 SGTQRCCWGS CFGKEVALRR VLHPSPVCMG VSCLCQKNED ECAVCRDGGE LICCDGCPRA 130 140 150 160 170 180 FHLACLSPPL REIPSGTWRC SSCLQATVQE VQPRAEEPRP QEPPVETPLP PGLRSAGEEV 190 200 210 220 230 240 RGPPGEPLAG MDTTLVYKHL PAPPSAAPLP GLDSSALHPL LCVGPEGQQN LAPGARCGVC 250 260 270 280 290 300 GDGTDVLRCT HCAAAFHWRC HFPAGTSRPG TGLRCRSCSG DVTPAPVEGV LAPSPARLAP 310 320 330 340 GPAKDDTASH EPALHRDDLE SLLSEHTFDG ILQWAIQSMA RPAAPFPS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Positional cloning of the APECED gene." Nagamine K., Peterson P., Scott H.S., Kudoh J., Minoshima S., Heino M., Krohn K.J.E., Lalioti M.D., Mullis P.E., Antonarakis S.E., Kawasaki K., Asakawa S., Ito F., Shimizu N. Nat. Genet. 17:393-398(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1; 2 AND 3), VARIANT APS1 GLU-83. Tissue: Thymus.
[2]	"An autoimmune disease, APECED, caused by mutations in a novel gene featuring two PHD-type zinc-finger domains." Aaltonen J., Bjoerses P., Perheentupa J., Horelli-Kuitunen N., Palotie A., Peltonen L., Lee Y.S., Francis F., Hennig S., Thiel C., Lehrach H., Yaspo M.-L. Nat. Genet. 17:399-403(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1). Tissue: Thymus.
[3]	Lee Y.S., Francis F., Hennig S., Thiel C., Reinhard R., Lehrach H., Yaspo M.-L. Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[4]	"The DNA sequence of human chromosome 21." Hattori M., Fujiyama A., Taylor T.D., Watanabe H., Yada T., Park H.-S., Toyoda A., Ishii K., Totoki Y., Choi D.-K., Groner Y., Soeda E., Ohki M., Takagi T., Sakaki Y., Taudien S., Blechschmidt K., Polley A. , Menzel U., Delabar J., Kumpf K., Lehmann R., Patterson D., Reichwald K., Rump A., Schillhabel M., Schudy A., Zimmermann W., Rosenthal A., Kudoh J., Shibuya K., Kawasaki K., Asakawa S., Shintani A., Sasaki T., Nagamine K., Mitsuyama S., Antonarakis S.E., Minoshima S., Shimizu N., Nordsiek G., Hornischer K., Brandt P., Scharfe M., Schoen O., Desario A., Reichelt J., Kauer G., Bloecker H., Ramser J., Beck A., Klages S., Hennig S., Riesselmann L., Dagand E., Wehrmeyer S., Borzym K., Gardiner K., Nizetic D., Francis F., Lehrach H., Reinhardt R., Yaspo M.-L. Nature 405:311-319(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]	Mural R.J., Istrail S., Sutton G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[6]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
[7]	"Localization of the APECED protein in distinct nuclear structures." Bjoerses P., Pelto-Huikko M., Kaukonen J., Aaltonen J., Peltonen L., Ulmanen I. Hum. Mol. Genet. 8:259-266(1999) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION.
[8]	"The autoimmune regulator (AIRE) is a DNA-binding protein." Kumar P.G., Laloraya M., Wang C.-Y., Ruan Q.-G., Davoodi-Semiromi A., Kao K.-J., She J.-X. J. Biol. Chem. 276:41357-41364(2001) [PubMed] [Europe PMC] [Abstract] Cited for: PARTIAL PROTEIN SEQUENCE, SUBUNIT STRUCTURE, DNA-BINDING, PHOSPHORYLATION.
[9]	"Mutations in the AIRE gene: effects on subcellular location and transactivation function of the autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy protein." Bjeorses P., Halonen M., Palvimo J.J., Kolmer M., Aaltonen J., Ellonen P., Perheentupa J., Ulmanen I., Peltonen L. Am. J. Hum. Genet. 66:378-392(2000) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, VARIANTS APS1 LEU-80; CYS-85; TYR-311 AND GLN-326.
[10]	"Subcellular localization of the autoimmune regulator protein. characterization of nuclear targeting and transcriptional activation domain." Pitkaenen J., Vaehaemurto P., Krohn K.J.E., Peterson P. J. Biol. Chem. 276:19597-19602(2001) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, TRANSCRIPTION ACTIVATION, MUTAGENESIS OF CYS-302 AND CYS-437, CHARACTERIZATION OF VARIANT APS1 PRO-28.
[11]	"APECED-causing mutations in AIRE reveal the functional domains of the protein." Halonen M., Kangas H., Rueppell T., Ilmarinen T., Ollila J., Kolmer M., Vihinen M., Palvimo J., Saarela J., Ulmanen I., Eskelin P. Hum. Mutat. 23:245-257(2004) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, CHARACTERIZATION OF VARIANTS APS1 LEU-15; MET-16; VAL-21; PRO-28; PRO-29; ARG-78; LEU-80; GLU-83; CYS-90; ARG-93; TRP-228 AND GLN-326.
[12]	"The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression." Org T., Chignola F., Hetenyi C., Gaetani M., Rebane A., Liiv I., Maran U., Mollica L., Bottomley M.J., Musco G., Peterson P. EMBO Rep. 9:370-376(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HISTONE H3 NON-METHYLATED OR MONO-METHYLATED AT LYS-4, FUNCTION, MUTAGENESIS OF ASP-297 AND ASP-312, CHARACTERIZATION OF VARIANTS APS1 MET-301 AND TYR-311.
[13]	"NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease." Bottomley M.J., Stier G., Pennacchini D., Legube G., Simon B., Akhtar A., Sattler M., Musco G. J. Biol. Chem. 280:11505-11512(2005) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR OF 293-354 IN COMPLEX WITH ZINC IONS, CHARACTERIZATION OF VARIANTS APS1 MET-301; TYR-311 AND GLN-326.
[14]	"The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation." Chignola F., Gaetani M., Rebane A., Org T., Mollica L., Zucchelli C., Spitaleri A., Mannella V., Peterson P., Musco G. Nucleic Acids Res. 37:2951-2961(2009) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR OF 293-354 IN COMPLEX WITH ZINC IONS AND UNMETHYLATED HISTONE H3 N-TERMINUS, MASS SPECTROMETRY, MUTAGENESIS OF ASN-295; GLU-298; ARG-303; ASP-304 AND GLU-307, INTERACTION WITH HISTOME H3.
[15]	"Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator." Chakravarty S., Zeng L., Zhou M.-M. Structure 17:670-679(2009) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR OF 294-347 IN COMPLEX WITH ZINC IONS AND UNMETHYLATED HISTONE H3 N-TERMINUS, CHARACTERIZATION OF VARIANTS APS1 MET-301; TYR-311; LEU-326 AND GLN-326.
[16]	"Mutation analyses of North American APS-1 patients." Heino M., Scott H.S., Chen Q., Peterson P., Maeenpaeae U., Papasavvas M.-P., Mittaz L., Barras C., Rossier C., Chrousos G.P., Stratakis C.A., Nagamine K., Kudoh J., Shimizu N., Maclaren N., Antonarakis S.E., Krohn K.J.E. Hum. Mutat. 13:69-74(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT APS1 PRO-28.
[17]	"Common mutations in autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy patients of different origins." Scott H.S., Heino M., Peterson P., Mittaz L., Lalioti M.D., Betterle C., Cohen A., Seri M., Lerone M., Romeo G., Collin P., Salo M., Metcalfe R., Weetman A., Papasavvas M.-P., Rossier C., Nagamine K., Kudoh J. , Shimizu N., Krohn K.J.E., Antonarakis S.E. Mol. Endocrinol. 12:1112-1119(1998) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT ARG-278.
[18]	"Identification of a novel mutation in the autoimmune regulator (AIRE-1) gene in a French family with autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy." Saugier-Veber P., Drouot N., Wolf L.M., Kuhn J.M., Frebourg T., Lefebvre H. Eur. J. Endocrinol. 144:347-351(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT APS1 LEU-326.
[19]	"APECED mutations in the autoimmune regulator (AIRE) gene." Heino M., Peterson P., Kudoh J., Shimizu N., Antonarakis S.E., Scott H.S., Krohn K.J.E. Hum. Mutat. 18:205-211(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS APS1 LEU-15; MET-16; PRO-28; PR0-29; ARG-78; LEU-80; GLU-83; CYS-85; CYS-90; ARG-93; MET-301; TYR-311 AND GLN-326, VARIANT ARG-278.
[20]	"Novel AIRE mutations and P450 cytochrome autoantibodies in Central and Eastern European patients with APECED." The MEWPE-APECED study group Cihakova D., Trebusak K., Heino M., Fadeyev V., Tiulpakov A., Battelino T., Tar A., Halasz Z., Bluemel P., Tawfik S., Krohn K., Lebl J., Peterson P. Hum. Mutat. 18:225-232(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS APS1 MET-16 AND ARG-78.
[21]	"A novel mutation of the autoimmune regulator gene in an Italian kindred with autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy, acting in a dominant fashion and strongly cosegregating with hypothyroid autoimmune thyroiditis." Cetani F., Barbesino G., Borsari S., Pardi E., Cianferotti L., Pinchera A., Marcocci C. J. Clin. Endocrinol. Metab. 86:4747-4752(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT APS1 TRP-228.
[22]	"Distinct clinical phenotype and immunoreactivity in Japanese siblings with autoimmune polyglandular syndrome type 1 (APS-1) associated with compound heterozygous novel AIRE gene mutations." Kogawa K., Kudoh J., Nagafuchi S., Ohga S., Katsuta H., Ishibashi H., Harada M., Hara T., Shimizu N. Clin. Immunol. 103:277-283(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT APS1 PRO-29.
[23]	"A novel missense mutation of AIRE gene in a patient with autoimmune polyendocrinopathy, candidiasis and ectodermal dystrophy (APECED), accompanied with progressive muscular atrophy: case report and review of the literature in Japan." Sato K., Nakajima K., Imamura H., Deguchi T., Horinouchi S., Yamazaki K., Yamada E., Kanaji Y., Takano K. Endocr. J. 49:625-633(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT APS1 CYS-15, VARIANT ARG-278.
[24]	"Delineation of the molecular defects in the AIRE gene in autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy patients from Southern Italy." Meloni A., Perniola R., Faa V., Corvaglia E., Cao A., Rosatelli M.C. J. Clin. Endocrinol. Metab. 87:841-846(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS APS1 ARG-78; LEU-252 AND LEU-539.
[25]	"AIRE mutations and human leukocyte antigen genotypes as determinants of the autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy phenotype." Halonen M., Eskelin P., Myhre A.-G., Perheentupa J., Husebye E.S., Kaempe O., Rorsman F., Peltonen L., Ulmanen I., Partanen J. J. Clin. Endocrinol. Metab. 87:2568-2574(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS APS1 VAL-21; CYS-85 AND TYR-311.
[26]	"Two novel mutations of the AIRE protein affecting its homodimerization properties." Meloni A., Fiorillo E., Corda D., Perniola R., Cao A., Rosatelli M.C. Hum. Mutat. 25:319-319(2005) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS APS1 22-VAL-ASP-23 DEL; SER-77 AND ARG-78, CHARACTERIZATION OF VARIANTS APS1 LEU-15; MET-16; 22-VAL-ASP-23 DEL; SER-77 AND ARG-78.
[27]	"Functional analysis of SAND mutations in AIRE supports dominant inheritance of the G228W mutation." Ilmarinen T., Eskelin P., Halonen M., Rueppell T., Kilpikari R., Torres G.D., Kangas H., Ulmanen I. Hum. Mutat. 26:322-331(2005) [PubMed] [Europe PMC] [Abstract] Cited for: CHARACTERIZATION OF VARIANT APS1 TRP-228.
+	Additional computationally mapped references.

Web resources

AIREbase

AIRE mutation db

GeneReviews

Mendelian genes autoimmune regulator (AIRE)

Leiden Open Variation Database (LOVD)

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB006682 mRNA. Translation: BAA23988.1.
AB006683 mRNA. Translation: BAA23989.1.
AB006684 Genomic DNA. Translation: BAA23990.1.
AB006684 Genomic DNA. Translation: BAA23991.1.
AB006684 Genomic DNA. Translation: BAA23992.1.
AB006685 mRNA. Translation: BAA23993.1.
Z97990 mRNA. Translation: CAB10790.1.
AJ009610 Genomic DNA. Translation: CAA08759.1.
AP001754 Genomic DNA. Translation: BAA95560.1.
AP001060 Genomic DNA. No translation available.
CH471079 Genomic DNA. Translation: EAX09443.1.
BC137268 mRNA. Translation: AAI37269.1.
BC137270 mRNA. Translation: AAI37271.1.

IPI

IPI00015149.
IPI00031178.
IPI00031188.

RefSeq

NP_000374.1. NM_000383.3.

UniGene

Hs.129829.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1XWH	NMR	-	A	293-354	[»]
2KE1	NMR	-	A	293-354	[»]
2KFT	NMR	-	A	294-347	[»]
2LRI	NMR	-	C	423-485	[»]

ProteinModelPortal

O43918.

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-47504N.

IntAct

O43918. 21 interactions.

MINT

MINT-6542056.

STRING

9606.ENSP00000291582.

PTM databases

PhosphoSite

O43918.

Proteomic databases

PaxDb

O43918.

PRIDE

O43918.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

Ensembl

ENST00000291582; ENSP00000291582; ENSG00000160224.
ENST00000337909; ENSP00000337986; ENSG00000160224.
ENST00000397994; ENSP00000381080; ENSG00000160224.
ENST00000468282; ENSP00000435713; ENSG00000160224.

GeneID

326.

KEGG

hsa:326.

UCSC

uc002zei.2. human.

Organism-specific databases

CTD

326.

GeneCards

GC21P045705.

HGNC

HGNC:360. AIRE.

HPA

HPA038267.

MIM

109100. phenotype.
240300. phenotype.
607358. gene.

neXtProt

NX_O43918.

Orphanet

3453. Autoimmune polyendocrinopathy type 1.

PharmGKB

PA24654.

GenAtlas

Search...

Phylogenomic databases

eggNOG

NOG317492.

HOGENOM

HOG000060093.

HOVERGEN

HBG014961.

InParanoid

O43918.

KO

K10603.

OMA

NDDECAV.

OrthoDB

EOG4VX25M.

PhylomeDB

O43918.

Gene expression databases

ArrayExpress

O43918.

Bgee

O43918.

CleanEx

HS_AIRE.

Genevestigator

O43918.

GermOnline

ENSG00000160224. Homo sapiens.

Family and domain databases

Gene3D

3.10.390.10. 1 hit.
3.30.40.10. 2 hits.

InterPro

IPR008087. AIRE.
IPR000770. SAND_dom.
IPR010919. SAND_dom-like.
IPR004865. Sp100.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]

Pfam

PF00628. PHD. 1 hit.
PF01342. SAND. 1 hit.
PF03172. Sp100. 1 hit.
[Graphical view]

PRINTS

PR01711. AIREGULATOR.

SMART

SM00249. PHD. 2 hits.
SM00258. SAND. 1 hit.
[Graphical view]

SUPFAM

SSF57903. FYVE_PHD_ZnF. 2 hits.
SSF63763. SAND_like. 1 hit.

PROSITE

PS51414. HSR. 1 hit.
PS50864. SAND. 1 hit.
PS01359. ZF_PHD_1. 2 hits.
PS50016. ZF_PHD_2. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

O43918.

GenomeRNAi

326.

NextBio

1337.

SOURCE

Search...

Entry information

Entry name

AIRE_HUMAN

Accession

Primary (citable) accession number: O43918
Secondary accession number(s): B2RP50 , O43922, O43932, O75745

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	June 1, 1998
Last modified:	May 1, 2013
This is version 143 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.