O43556 (SGCE_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 98.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Epsilon-sarcoglycan Short name=Epsilon-SG | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 437 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix. |
| Subcellular location | Cell membrane › sarcolemma; Single-pass membrane protein Potential. Cytoplasm › cytoskeleton By similarity. |
| Tissue specificity | Ubiquitous. |
| Involvement in disease | Defects in SGCE are a cause of dystonia type 11 (DYT11) [MIM:159900]; also known as myoclonic dystonia or alcohol-responsive dystonia. DYT11 is a myoclonic dystonia. Dystonia is defined by the presence of sustained involuntary muscle contractions, often leading to abnormal postures. DYT11 is characterized by involuntary lightning jerks and dystonic movements and postures alleviated by alcohol. Inheritance is autosomal dominant. The age of onset, pattern of body involvement, presence of myoclonus and response to alcohol are all variable. Ref.11 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 Ref.19 Ref.20 Ref.21 |
| Sequence similarities | Belongs to the sarcoglycan alpha/epsilon family. |
| Sequence caution | The sequence AAC04368.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cell membrane Cytoplasm Cytoskeleton Membrane |
| Disease | Disease mutation Dystonia |
| Domain | Transmembrane Transmembrane helix |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | cell-matrix adhesion Traceable author statement. Source: ProtInc muscle organ developmentTraceable author statement. Source: ProtInc |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-KW cytoskeletonInferred from electronic annotation. Source: UniProtKB-SubCell integral to plasma membraneTraceable author statement. Source: ProtInc sarcoglycan complexTraceable author statement. Source: ProtInc sarcolemmaInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | calcium ion binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 437 | 437 | Epsilon-sarcoglycan | PRO_0000031677 | |||||
Regions | |||||||||
| Topological domain | 1 – 317 | 317 | Extracellular Potential | ||||||
| Transmembrane | 318 – 338 | 21 | Helical; Potential | ||||||
| Topological domain | 339 – 437 | 99 | Cytoplasmic Potential | ||||||
| Compositional bias | 235 – 341 | 107 | Cys-rich | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 200 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
Natural variations | |||||||||
| Natural variant | 36 | 1 | T → R in DYT11. Ref.18 | VAR_066732 | |||||
| Natural variant | 49 | 1 | N → S. Ref.8 Corresponds to variant rs11548284 [ dbSNP | Ensembl ]. | VAR_058088 | |||||
| Natural variant | 60 | 1 | H → P in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.15 Ref.21 | VAR_066733 | |||||
| Natural variant | 60 | 1 | H → R in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.14 Ref.21 | VAR_066734 | |||||
| Natural variant | 92 | 1 | M → T in DYT11; results in gain-of-glycosylation; the mutant is targeted to the plasma membrane at reduced levels compared to wild-type. Ref.16 Ref.21 | VAR_066735 | |||||
| Natural variant | 100 | 1 | W → G in DYT11. Ref.19 | VAR_066736 | |||||
| Natural variant | 112 | 1 | G → R in DYT11. Ref.17 | VAR_066737 | |||||
| Natural variant | 115 | 1 | Y → C in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.16 Ref.19 Ref.21 | VAR_066738 | |||||
| Natural variant | 175 | 1 | L → S in DYT11. Ref.20 | VAR_066739 | |||||
| Natural variant | 177 | 1 | S → C in DYT11. Ref.20 | VAR_066740 | |||||
| Natural variant | 184 | 1 | L → P in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.18 | VAR_066741 | |||||
| Natural variant | 196 | 1 | L → R in DYT11. Ref.13 | VAR_026750 | |||||
| Natural variant | 270 | 1 | W → R in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.20 Ref.21 | VAR_066742 | |||||
| Natural variant | 271 | 1 | C → Y in DYT11; affects protein stability; the mutant undergoes endoplasmic reticulum-associated degradation. Ref.16 Ref.21 | VAR_066743 | |||||
| Natural variant | 399 | 1 | P → H. Ref.8 Corresponds to variant rs17851923 [ dbSNP | Ensembl ]. | VAR_058089 | |||||
Experimental info | |||||||||
| Sequence conflict | 78 | 1 | G → S in AAM64204. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Human epsilon-sarcoglycan is highly related to alpha-sarcoglycan (adhalin), the limb girdle muscular dystrophy 2D gene." McNally E.M., Ly C.T., Kunkel L.M. FEBS Lett. 422:27-32(1998) [PubMed: 9475163] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Heart. |
| [2] | Nigro V. Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Heart. |
| [3] | "Epsilon-sarcoglycan mutations in three ethnically diverse families segregating Myoclonus-Dystonia." Dagvadorj A. Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [4] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed: 12975309] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain cortex. |
| [6] | "The DNA sequence of human chromosome 7." Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. Wilson R.K.Nature 424:157-164(2003) [PubMed: 12853948] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS SER-49 AND HIS-399. Tissue: Testis. |
| [9] | "Epsilon-sarcoglycan, a broadly expressed homologue of the gene mutated in limb-girdle muscular dystrophy 2D." Ettinger A.J., Feng G., Sanes J.R. J. Biol. Chem. 272:32534-32538(1997) [PubMed: 9405466] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 293-437. |
| [10] | Erratum Ettinger A.J., Feng G., Sanes J.R. J. Biol. Chem. 273:19922-19922(1998) |
| [11] | "Mutations in the gene encoding epsilon-sarcoglycan cause myoclonus-dystonia syndrome." Zimprich A., Grabowski M., Asmus F., Naumann M., Berg D., Bertram M., Scheidtmann K., Kern P., Winkelmann J., Muller-Myhsok B., Riedel L., Bauer M., Muller T., Castro M., Meitinger T., Strom T.M., Gasser T. Nat. Genet. 29:66-69(2001) [PubMed: 11528394] [Abstract] Cited for: INVOLVEMENT IN DYT11. |
| [12] | "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry." Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H. J. Proteome Res. 8:651-661(2009) [PubMed: 19159218] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-200, MASS SPECTROMETRY. Tissue: Liver. |
| [13] | "Epsilon-sarcoglycan mutations found in combination with other dystonia gene mutations." Klein C., Liu L., Doheny D., Kock N., Muller B., de Carvalho Aguiar P., Leung J., de Leon D., Bressman S.B., Silverman J., Smith C., Danisi F., Morrison C., Walker R.H., Velickovic M., Schwinger E., Kramer P.L., Breakefield X.O., Brin M.F., Ozelius L.J. Ann. Neurol. 52:675-679(2002) [PubMed: 12402271] [Abstract] Cited for: VARIANT DYT11 ARG-196. |
| [14] | "Genetic heterogeneity in ten families with myoclonus-dystonia." Schule B., Kock N., Svetel M., Dragasevic N., Hedrich K., De Carvalho Aguiar P., Liu L., Kabakci K., Garrels J., Meyer E.M., Berisavac I., Schwinger E., Kramer P.L., Ozelius L.J., Klein C., Kostic V. J. Neurol. Neurosurg. Psych. 75:1181-1185(2004) [PubMed: 15258227] [Abstract] Cited for: VARIANT DYT11 ARG-60. |
| [15] | "Myoclonus-dystonia: detection of novel, recurrent, and de novo SGCE mutations." Hedrich K., Meyer E.M., Schule B., Kock N., de Carvalho Aguiar P., Wiegers K., Koelman J.H., Garrels J., Durr R., Liu L., Schwinger E., Ozelius L.J., Landwehrmeyer B., Stoessl A.J., Tijssen M.A., Klein C. Neurology 62:1229-1231(2004) [PubMed: 15079037] [Abstract] Cited for: VARIANT DYT11 PRO-60. |
| [16] | "Epsilon sarcoglycan mutations and phenotype in French patients with myoclonic syndromes." Tezenas du Montcel S., Clot F., Vidailhet M., Roze E., Damier P., Jedynak C.P., Camuzat A., Lagueny A., Vercueil L., Doummar D., Guyant-Marechal L., Houeto J.L., Ponsot G., Thobois S., Cournelle M.A., Durr A., Durif F., Echenne B. Brice A.J. Med. Genet. 43:394-400(2006) [PubMed: 16227522] [Abstract] Cited for: VARIANTS DYT11 THR-92; CYS-115 AND TYR-271. |
| [17] | "Myoclonus-dystonia syndrome: clinical presentation, disease course, and genetic features in 11 families." Nardocci N., Zorzi G., Barzaghi C., Zibordi F., Ciano C., Ghezzi D., Garavaglia B. Mov. Disord. 23:28-34(2008) [PubMed: 17853490] [Abstract] Cited for: VARIANT DYT11 ARG-112. |
| [18] | "Phenotypic spectrum and sex effects in eleven myoclonus-dystonia families with epsilon-sarcoglycan mutations." Raymond D., Saunders-Pullman R., de Carvalho Aguiar P., Schule B., Kock N., Friedman J., Harris J., Ford B., Frucht S., Heiman G.A., Jennings D., Doheny D., Brin M.F., de Leon Brin D., Multhaupt-Buell T., Lang A.E., Kurlan R., Klein C., Ozelius L., Bressman S. Mov. Disord. 23:588-592(2008) [PubMed: 18175340] [Abstract] Cited for: VARIANTS DYT11 ARG-36 AND PRO-184. |
| [19] | "Myoclonus-dystonia: clinical and electrophysiologic pattern related to SGCE mutations." Roze E., Apartis E., Clot F., Dorison N., Thobois S., Guyant-Marechal L., Tranchant C., Damier P., Doummar D., Bahi-Buisson N., Andre-Obadia N., Maltete D., Echaniz-Laguna A., Pereon Y., Beaugendre Y., Dupont S., De Greslan T., Jedynak C.P. Vidailhet M.Neurology 70:1010-1016(2008) [PubMed: 18362280] [Abstract] Cited for: VARIANTS DYT11 GLY-100 AND CYS-115. |
| [20] | "Myoclonus-dystonia: clinical and genetic evaluation of a large cohort." Ritz K., Gerrits M.C., Foncke E.M., van Ruissen F., van der Linden C., Vergouwen M.D., Bloem B.R., Vandenberghe W., Crols R., Speelman J.D., Baas F., Tijssen M.A. J. Neurol. Neurosurg. Psych. 80:653-658(2009) [PubMed: 19066193] [Abstract] Cited for: VARIANTS DYT11 SER-175; CYS-177 AND ARG-270. |
| [21] | "A gain-of-glycosylation mutation associated with myoclonus-dystonia syndrome affects trafficking and processing of mouse epsilon-sarcoglycan in the late secretory pathway." Waite A., De Rosa M.C., Brancaccio A., Blake D.J. Hum. Mutat. 32:1246-1258(2011) [PubMed: 21796726] [Abstract] Cited for: CHARACTERIZATION OF VARIANTS DYT11 ARG-60; PRO-60; THR-92; CYS-115; ARG-270 AND TYR-271. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF036364 mRNA. Translation: AAC04368.1. Different initiation. AJ000534 mRNA. Translation: CAA04167.1. AF516515 mRNA. Translation: AAM64204.1. AY359042 mRNA. Translation: AAQ89401.1. AK313438 mRNA. Translation: BAG36229.1. AC069292 Genomic DNA. Translation: AAS07485.1. CH471091 Genomic DNA. Translation: EAW76784.1. CH471091 Genomic DNA. Translation: EAW76785.1. BC021709 mRNA. Translation: AAH21709.1. AF031920 mRNA. Translation: AAC14021.1. |
| IPI | IPI00418183. |
| RefSeq | NP_001092870.1. NM_001099400.1. NP_001092871.1. NM_001099401.1. NP_003910.1. NM_003919.2. |
| UniGene | Hs.371199. |
3D structure databases | |
| ProteinModelPortal | O43556. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O43556. 2 interactions. |
| MINT | MINT-1415529. |
| STRING | O43556. |
Proteomic databases | |
| PRIDE | O43556. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000265735; ENSP00000265735; ENSG00000127990. |
| GeneID | 8910. |
| KEGG | hsa:8910. |
| UCSC | uc003unl.2. human. |
Organism-specific databases | |
| CTD | 8910. |
| GeneCards | GC07M094214. |
| H-InvDB | HIX0006856. |
| HGNC | HGNC:10808. SGCE. |
| MIM | 159900. phenotype. 604149. gene. |
| neXtProt | NX_O43556. |
| Orphanet | 36899. Myoclonic dystonia. |
| PharmGKB | PA35719. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG18053. |
| GeneTree | ENSGT00390000005672. |
| HOVERGEN | HBG006891. |
| OrthoDB | EOG46WZ8J. |
| PhylomeDB | O43556. |
Gene expression databases | |
| ArrayExpress | O43556. |
| Bgee | O43556. |
| CleanEx | HS_SGCE. |
| Genevestigator | O43556. |
| GermOnline | ENSG00000127990. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR006644. Cadg. IPR008908. Sarcoglycan_2. [Graphical view] |
| PANTHER | PTHR10132. Sarcoglycan_2. 1 hit. |
| Pfam | PF05510. Sarcoglycan_2. 1 hit. [Graphical view] |
| SMART | SM00736. CADG. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 33480. |
| SOURCE | Search... |
Entry information
| Entry name | SGCE_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O43556 Secondary accession number(s): B2R8N2 Q8WW28 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with