O43541 (SMAD6_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Mothers against decapentaplegic homolog 6 Short name=MAD homolog 6 Short name=Mothers against DPP homolog 6 Alternative name(s): SMAD family member 6 Short name=SMAD 6 Short name=Smad6 Short name=hSMAD6 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 496 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Acts as a mediator of TGF-beta and BMP antiflammatory activity. Suppresses IL1R-TLR signaling through its direct interaction with PEL1, preventing NF-kappa-B activation, nuclear transport and NF-kappa-B-mediated expression of proinflammatory genes. May block the BMP-SMAD1 signaling pathway by competing with SMAD4 for receptor-activated SMAD1-binding. Binds to regulatory elements in target promoter regions. Ref.2 Ref.13 Ref.17 Ref.18 |
| Subunit structure | Interacts with NEDD4L By similarity. Interacts with WWP1 By similarity. Interacts with STAMBP and PRKX. Interacts with RNF111 and AXIN1. Interacts with TGF-beta type I receptor superfamily members, including ACVR1B, BMPR1B and TGFBR1. In response to BMP2, but not to TGFB treatment, interacts with SMAD1, but not with SMAD2, nor with SMAD4; this interaction may inhibit SMAD1 binding to SMAD4. Interacts with HOXC8 and HOXC9. Interacts with PELI1; this interaction interferes with PELI1 complex formation with TRAF6, IRAK1, IRAK4 and MYD88 in response to IL1B and hence negatively regulates IL1R-TLR signaling. Ref.2 Ref.12 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 |
| Subcellular location | |
| Tissue specificity | Ubiquitous in various organs, with higher levels in lung. Isoform B is up-regulated in diseased heart tissue. |
| Post-translational modification | Phosphorylated by BMP type 1 receptor kinase and by PRKX. Ref.18 Ubiquitinated by WWP1 By similarity. |
| Involvement in disease | Aortic valve disease 2 (AOVD2) [MIM:614823]: A common defect in the aortic valve in which two rather than three leaflets are present. It is often associated with aortic valve calcification, stenosis and insufficiency. In extreme cases, the blood flow may be so restricted that the left ventricle fails to grow, resulting in hypoplastic left heart syndrome. |
| Sequence similarities | Belongs to the dwarfin/SMAD family. Contains 1 MH1 (MAD homology 1) domain. Contains 1 MH2 (MAD homology 2) domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PRKX | P51817 | 5 | EBI-976374,EBI-4302903 | |
| RUNX2 | Q13950 | 3 | EBI-976374,EBI-976402 | |
| STAMBP | O95630 | 2 | EBI-4324970,EBI-396676 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform A (identifier: O43541-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform B (identifier: O43541-2) Also known as: Smad 6S; The sequence of this isoform differs from the canonical sequence as follows: 1-261: Missing. 262-273: NPYHFSRLCGPE → MSRMGKPIETQK | ||||||
| Isoform D (identifier: O43541-4) The sequence of this isoform differs from the canonical sequence as follows: 318-338: DASMSPDATKPSHWCSVAYWE → AADAGIGSRGNRGLESSVPCS 339-496: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 496 | 496 | Mothers against decapentaplegic homolog 6 | PRO_0000090869 | |||||
Regions | |||||||||
| Domain | 148 – 275 | 128 | MH1 | ||||||
| Domain | 331 – 496 | 166 | MH2 | ||||||
| Compositional bias | 25 – 33 | 9 | Poly-Gly | ||||||
| Compositional bias | 82 – 85 | 4 | Poly-Arg | ||||||
| Compositional bias | 165 – 168 | 4 | Poly-Leu | ||||||
| Compositional bias | 251 – 254 | 4 | Poly-Ala | ||||||
| Compositional bias | 275 – 278 | 4 | Poly-Pro | ||||||
Sites | |||||||||
| Metal binding | 205 | 1 | Zinc By similarity | ||||||
| Metal binding | 247 | 1 | Zinc By similarity | ||||||
| Metal binding | 260 | 1 | Zinc By similarity | ||||||
| Metal binding | 265 | 1 | Zinc By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 435 | 1 | Phosphoserine; by PRKX; in vitro Ref.18 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 261 | 261 | Missing in isoform B. | VSP_006179 | |||||
| Alternative sequence | 262 – 273 | 12 | NPYHF…LCGPE → MSRMGKPIETQK in isoform B. | VSP_006180 | |||||
| Alternative sequence | 318 – 338 | 21 | DASMS…VAYWE → AADAGIGSRGNRGLESSVPC S in isoform D. | VSP_035489 | |||||
| Alternative sequence | 339 – 496 | 158 | Missing in isoform D. | VSP_035490 | |||||
| Natural variant | 325 | 1 | A → T Found in a patient with congenital mitral valve prolapse. Ref.19 Corresponds to variant rs199822239 [ dbSNP | Ensembl ]. | VAR_068074 | |||||
| Natural variant | 415 | 1 | P → L in AOVD2; results in significantly lower activity than wild-type in inhibiting BMP signaling in a transcriptional reporter assay. Ref.19 | VAR_068075 | |||||
| Natural variant | 484 | 1 | C → F in AOVD2; results in significantly lower activity than wild-type in inhibiting BMP signaling in a transcriptional reporter assay. Ref.19 | VAR_068076 | |||||
Experimental info | |||||||||
| Mutagenesis | 435 | 1 | S → A: Loss of in vitro phosphorylation by PRKX. Ref.18 | ||||||
| Mutagenesis | 471 | 1 | G → S: Loss of SMAD1-binding and of inhibition of BMP-SMAD1 signaling. No effect on interaction with BMPR1B and TGFBR1. Ref.2 | ||||||
| Mutagenesis | 478 – 496 | 19 | Missing: Loss of interaction with BMPR1B, TGFBR1 and SMAD1. Ref.2 | ||||||
| Sequence conflict | 21 | 1 | D → N in AAB94137. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Mad-related genes in the human." Riggins G.J., Thiagalingam S., Rosenblum E., Weinstein C.L., Kern S.E., Hamilton S.R., Willson J.K.V., Markowitz S.D., Kinzler K.W., Vogelstein B.V. Nat. Genet. 13:347-349(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B). |
| [2] | "Smad6 inhibits BMP/Smad1 signaling by specifically competing with the Smad4 tumor suppressor." Hata A., Lagna G., Massague J., Hemmati-Brivanlou A. Genes Dev. 12:186-197(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A), FUNCTION, INTERACTION WITH ACVR1B; BMPR1B; SMAD1 AND TGFBR1, MUTAGENESIS OF GLY-471 AND 478-ARG--ARG-496. Tissue: T-cell. |
| [3] | "Induction of inhibitory Smad6 and Smad7 mRNA by TGF-beta family members." Afrakhte M., Moren A., Jossan S., Itoh S., Sampath K., Westermark B., Heldin C.H., Heldin N.E., ten Dijke P. Biochem. Biophys. Res. Commun. 249:505-511(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). Tissue: Placenta. |
| [4] | Hagiwara K., Freeman A.H., McMenamin M.G., Bennett W.P., Nagashima M., Minter A.R., Yang K., Takenoshita S., Harris C.C. Submitted (JAN-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM A). |
| [5] | "Identification of a new SMAD6 variant in human." Konrad L., Scheiber J.A., Brandt H., Eickelberg O., Hofmann R. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM D). Tissue: Prostatic carcinoma. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A). Tissue: Uterus. |
| [7] | "Determination of the genomic structure of human Smad3, Smad6 and Smad7 and the cloning of the human Smad3 promoter." Hagiwara K., Freeman A.A.H., McMenamin M.G., Bennett W.P., Yang K., Takenoshita S., Harris C.C. Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases Cited for: PARTIAL NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM B). |
| [8] | "TGF-beta signal transduction." Massague J. Annu. Rev. Biochem. 67:753-791(1998) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| [9] | "Remarkable versatility of Smad proteins in the nucleus of transforming growth factor-beta activated cells." Verschueren K., Huylebroeck D. Cytokine Growth Factor Rev. 10:187-199(1999) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| [10] | "The Smad pathway." Wrana J.L., Attisano L. Cytokine Growth Factor Rev. 11:5-13(2000) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| [11] | "TGF-beta signaling by Smad proteins." Miyazono K. Cytokine Growth Factor Rev. 11:15-22(2000) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| [12] | "Smad6 as a transcriptional corepressor." Bai S., Shi X., Yang X., Cao X. J. Biol. Chem. 275:8267-8270(2000) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HOXC8. |
| [13] | "Human truncated Smad 6 (Smad 6s) inhibits the BMP pathway in Xenopus laevis." Krishnan P., King M.W., Neff A.W., Sandusky G.E., Bierman K.L., Grinnell B., Smith R.C. Dev. Growth Differ. 43:115-132(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION (ISOFORM B). |
| [14] | "Promoting bone morphogenetic protein signaling through negative regulation of inhibitory Smads." Itoh F., Asao H., Sugamura K., Heldin C.-H., ten Dijke P., Itoh S. EMBO J. 20:4132-4142(2001) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH STAMBP. |
| [15] | "Arkadia amplifies TGF-beta superfamily signaling through degradation of Smad7." Koinuma D., Shinozaki M., Komuro A., Goto K., Saitoh M., Hanyu A., Ebina M., Nukiwa T., Miyazawa K., Imamura T., Miyazono K. EMBO J. 22:6458-6470(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RNF111. |
| [16] | "Axin is a scaffold protein in TGF-beta signaling that promotes degradation of Smad7 by Arkadia." Liu W., Rui H., Wang J., Lin S., He Y., Chen M., Li Q., Ye Z., Zhang S., Chan S.C., Chen Y.-G., Han J., Lin S.-C. EMBO J. 25:1646-1658(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH AXIN1. |
| [17] | "Smad6 negatively regulates interleukin 1-receptor-Toll-like receptor signaling through direct interaction with the adaptor Pellino-1." Choi K.C., Lee Y.S., Lim S., Choi H.K., Lee C.H., Lee E.K., Hong S., Kim I.H., Kim S.J., Park S.H. Nat. Immunol. 7:1057-1065(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH PELI1. |
| [18] | "Smad6 is a protein kinase X phosphorylation substrate and is required for HL-60 cell differentiation." Glesne D., Huberman E. Oncogene 25:4086-4098(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH PRKX, MUTAGENESIS OF SER-435, PHOSPHORYLATION AT SER-435. |
| [19] | "Nonsynonymous variants in the SMAD6 gene predispose to congenital cardiovascular malformation." Tan H.L., Glen E., Topf A., Hall D., O'Sullivan J.J., Sneddon L., Wren C., Avery P., Lewis R.J., ten Dijke P., Arthur H.M., Goodship J.A., Keavney B.D. Hum. Mutat. 33:720-727(2012) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN CONGENITAL CARDIOVASCULAR MALFORMATIONS, VARIANT THR-325, VARIANTS AOVD2 LEU-415 AND PHE-484, CHARACTERIZATION OF VARIANTS AOVD2 LEU-415 AND PHE-484. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U59914 mRNA. Translation: AAC50792.1. AF035528 mRNA. Translation: AAB94137.1. AF043640 mRNA. Translation: AAC00497.1. AF037469 mRNA. Translation: AAC82331.1. AF041065 AF041064 Genomic DNA. Translation: AAF14343.1.AM909653 mRNA. Translation: CAP20377.1. BC012986 mRNA. Translation: AAH12986.1. AF101474 Genomic DNA. Translation: AAF06841.1. |
| IPI | IPI00012869. IPI00218149. IPI00884203. |
| RefSeq | NP_001136333.1. NM_001142861.2. NP_005576.3. NM_005585.4. |
| UniGene | Hs.153863. |
3D structure databases | |
| ProteinModelPortal | O43541. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O43541. 4 interactions. |
| MINT | MINT-1198639. |
| STRING | 9606.ENSP00000288840. |
PTM databases | |
| PhosphoSite | O43541. |
Proteomic databases | |
| PaxDb | O43541. |
| PRIDE | O43541. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000288840; ENSP00000288840; ENSG00000137834. ENST00000338426; ENSP00000345054; ENSG00000137834. ENST00000457357; ENSP00000396961; ENSG00000137834. ENST00000557916; ENSP00000452955; ENSG00000137834. |
| GeneID | 4091. |
| KEGG | hsa:4091. |
| UCSC | uc002aqf.3. human. uc002aqg.3. human. |
Organism-specific databases | |
| CTD | 4091. |
| GeneCards | GC15P066994. |
| H-InvDB | HIX0132566. |
| HGNC | HGNC:6772. SMAD6. |
| MIM | 602931. gene. 614823. phenotype. |
| neXtProt | NX_O43541. |
| PharmGKB | PA30529. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG309572. |
| HOVERGEN | HBG053021. |
| InParanoid | O43541. |
| KO | K04677. |
| OMA | VESRGGM. |
| OrthoDB | EOG4GTKCT. |
| PhylomeDB | O43541. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | bmppathway. BMP receptor signaling. |
| Reactome | REACT_111102. Signal Transduction. |
Gene expression databases | |
| ArrayExpress | O43541. |
| Bgee | O43541. |
| CleanEx | HS_SMAD6. |
| Genevestigator | O43541. |
| GermOnline | ENSG00000137834. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.60.200.10. 1 hit. 3.90.520.10. 2 hits. |
| InterPro | IPR013790. Dwarfin. IPR003619. MAD_homology1_Dwarfin-type. IPR013019. MAD_homology_MH1. IPR017855. SMAD_dom-like. IPR001132. SMAD_dom_Dwarfin-type. IPR008984. SMAD_FHA_domain. [Graphical view] |
| PANTHER | PTHR13703. PTHR13703. 1 hit. |
| Pfam | PF03165. MH1. 1 hit. PF03166. MH2. 1 hit. [Graphical view] |
| SMART | SM00523. DWA. 1 hit. SM00524. DWB. 1 hit. [Graphical view] |
| SUPFAM | SSF56366. MAD_MH1. 1 hit. SSF49879. SMAD_FHA. 1 hit. |
| PROSITE | PS51075. MH1. 1 hit. PS51076. MH2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SMAD6. human. |
| GenomeRNAi | 4091. |
| NextBio | 16042. |
| SOURCE | Search... |
Entry information
| Entry name | SMAD6_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O43541 Secondary accession number(s): A9J6M5 Q9UKZ3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 15 Human chromosome 15: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
