O43516 (WIPF1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 107.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: WAS/WASL-interacting protein family member 1 Alternative name(s): Protein PRPL-2 Wiskott-Aldrich syndrome protein-interacting protein Short name=WASP-interacting protein | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 503 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May have direct activity on the actin cytoskeleton. Induces actin polymerization and redistribution. Contributes with NCK1 and GRB2 in the recruitment and activation of WASL. May participate in regulating the subcellular localization of WASL, resulting in the disassembly of stress fibers in favor of filopodia formation By similarity. Plays an important role in the intracellular motility of vaccinia virus by functioning as an adapter for recruiting WASL to vaccinia virus. Ref.1 Ref.8 |
| Subunit structure | Binds to WAS, profilin and actin. Binds to WASL By similarity. Ref.1 Ref.7 |
| Subcellular location | Cytoplasmic vesicle By similarity. Cytoplasm › cytoskeleton By similarity. Note: Vesicle surfaces and along actin tails. Co-localized with actin stress fibers. When co-expressed with WASL, no longer associated with actin filaments but accumulated in perinuclear and cortical areas like WASL By similarity. |
| Tissue specificity | Highly expressed in peripheral blood mononuclear cells, spleen, placenta, small intestine, colon and thymus. Lower expression in ovary, heart, brain, lung, liver, skeletal muscle, kidney, pancreas, prostate and testis. Ref.1 |
| Domain | Binds to WAS within the N-terminal region 170, at a site distinct from the CDC42-binding site. |
| Miscellaneous | Recruited to PIP5K-induced vesicle surfaces in the absence of functional WASL By similarity. |
| Sequence similarities | Belongs to the verprolin family. Contains 1 WH2 domain. |
| Sequence caution | The sequence AAC03767.1 differs from that shown. Reason: Frameshift at positions 302 and 310. The sequence CAA60014.1 differs from that shown. Reason: Frameshift at positions 302 and 310. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Cytoplasmic vesicle Cytoskeleton |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat |
| Ligand | Actin-binding |
| PTM | Phosphoprotein |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | actin polymerization or depolymerization Traceable author statement. Source: ProtInc protein complex assemblyTraceable author statement. Source: ProtInc |
| Cellular component | cytoplasmic membrane-bounded vesicle Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | actin binding Traceable author statement. Source: ProtInc profilin bindingTraceable author statement. Source: ProtInc |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Cttn | Q60598 | 3 | EBI-346356,EBI-397955 | From a different organism. |
| GRB2 | P62993 | 3 | EBI-346356,EBI-401755 | |
| HCK | P08631 | 3 | EBI-346356,EBI-346340 | |
| NCK1 | P16333 | 2 | EBI-346356,EBI-389883 | |
| WAS | P42768 | 9 | EBI-346356,EBI-346375 |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O43516-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O43516-2) The sequence of this isoform differs from the canonical sequence as follows: 487-503: GSNRRERGAPPLPPIPR → EYFCQGF | ||||||
| Isoform 3 (identifier: O43516-3) The sequence of this isoform differs from the canonical sequence as follows: 503-503: R → RPPKQAAE | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: O43516-4) The sequence of this isoform differs from the canonical sequence as follows: 220-364: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 503 | 503 | WAS/WASL-interacting protein family member 1 | PRO_0000065941 | |||||||
Regions | |||||||||||
| Domain | 32 – 49 | 18 | WH2 | ||||||||
| Repeat | 352 – 361 | 10 | XRSGPXPPXP motif 1 | ||||||||
| Repeat | 374 – 383 | 10 | XRSGPXPPXP motif 2 | ||||||||
| Repeat | 410 – 419 | 10 | XRSGPXPPXP motif 3 | ||||||||
| Region | 45 – 48 | 4 | Binds actin | ||||||||
| Compositional bias | 2 – 13 | 12 | Poly-Pro | ||||||||
| Compositional bias | 64 – 96 | 33 | Gly-rich | ||||||||
| Compositional bias | 241 – 244 | 4 | Poly-Ser | ||||||||
| Compositional bias | 264 – 433 | 170 | Pro-rich | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 276 | 1 | Phosphoserine By similarity | ||||||||
| Modified residue | 340 | 1 | Phosphoserine Ref.10 Ref.12 | ||||||||
| Modified residue | 345 | 1 | Phosphothreonine Ref.11 | ||||||||
| Modified residue | 350 | 1 | Phosphoserine Ref.9 Ref.11 Ref.12 | ||||||||
Natural variations | |||||||||||
| Alternative sequence | 220 – 364 | 145 | Missing in isoform 4. | VSP_012964 | |||||||
| Alternative sequence | 487 – 503 | 17 | GSNRR…PPIPR → EYFCQGF in isoform 2. | VSP_012965 | |||||||
| Alternative sequence | 503 | 1 | R → RPPKQAAE in isoform 3. | VSP_012966 | |||||||
| Natural variant | 198 | 1 | P → L. Ref.1 Ref.2 Ref.3 Ref.5 Ref.6 Ref.7 Corresponds to variant rs4972450 [ dbSNP | Ensembl ]. | VAR_046526 | |||||||
| Natural variant | 495 | 1 | A → G. Ref.1 Ref.2 | VAR_010295 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 119 | 1 | N → D in CAE45928. Ref.3 | ||||||||
| Sequence conflict | 120 | 1 | D → H in AAH02914. Ref.6 | ||||||||
| Sequence conflict | 360 | 1 | P → PV in CAA60014. Ref.2 | ||||||||
Secondary structure | |||||||||||
Helix Strand Turn | |||||||||||
| Helix | 33 – 42 | 10 | |||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "WIP, a protein associated with Wiskott-Aldrich syndrome protein, induces actin polymerization and redistribution in lymphoid cells." Ramesh N., Anton I.M., Hartwig J.H., Geha R.S. Proc. Natl. Acad. Sci. U.S.A. 94:14671-14676(1997) [PubMed: 9405671] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS LEU-198 AND GLY-495, FUNCTION, TISSUE SPECIFICITY, INTERACTION WITH WASP; PROFILIN AND ACTIN. |
| [2] | Kreideweiss S., Delany-Heiken P., Nordheim A., Ruhlmann A. Submitted (JAN-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), VARIANTS LEU-198 AND GLY-495. Tissue: Tonsil. |
| [3] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), VARIANT LEU-198. Tissue: Endometrial tumor. |
| [4] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed: 15815621] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT LEU-198. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4), VARIANT LEU-198. Tissue: Skin. |
| [7] | "Mutations that cause the Wiskott-Aldrich syndrome impair the interaction of Wiskott-Aldrich syndrome protein (WASP) with WASP interacting protein." Stewart D.M., Tian L., Nelson D.L. J. Immunol. 162:5019-5024(1999) [PubMed: 10202051] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 192-503 (ISOFORM 1), INTERACTION WITH WASP, VARIANT LEU-198. |
| [8] | "A complex of N-WASP and WIP integrates signalling cascades that lead to actin polymerization." Moreau V., Frischknecht F., Reckmann I., Vincentelli R., Rabut G., Stewart D.M., Way M. Nat. Cell Biol. 2:441-448(2000) [PubMed: 10878810] [Abstract] Cited for: FUNCTION. |
| [9] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-350, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment." Carrascal M., Ovelleiro D., Casas V., Gay M., Abian J. J. Proteome Res. 7:5167-5176(2008) [PubMed: 19367720] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-340, MASS SPECTROMETRY. Tissue: T-cell. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-345 AND SER-350, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-340 AND SER-350, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly." Chereau D., Kerff F., Graceffa P., Grabarek Z., Langsetmo K., Dominguez R. Proc. Natl. Acad. Sci. U.S.A. 102:16644-16649(2005) [PubMed: 16275905] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 29-60 IN COMPLEX WITH ACTIN. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF031588 mRNA. Translation: AAC03767.1. Frameshift. X86019 mRNA. Translation: CAA60014.1. Frameshift. BX640870 mRNA. Translation: CAE45928.1. AC010894 Genomic DNA. Translation: AAY14708.1. AC104595 Genomic DNA. No translation available. CH471058 Genomic DNA. Translation: EAX11131.1. CH471058 Genomic DNA. Translation: EAX11132.1. CH471058 Genomic DNA. Translation: EAX11133.1. BC002914 mRNA. Translation: AAH02914.1. AF106062 mRNA. Translation: AAD45972.1. | ||||||||||||
| IPI | IPI00418328. IPI00552369. IPI00797331. IPI00952673. | ||||||||||||
| RefSeq | NP_001070737.1. NM_001077269.1. NP_003378.3. NM_003387.4. | ||||||||||||
| UniGene | Hs.128067. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | O43516. | ||||||||||||
| SMR | O43516. Positions 29-60, 461-488. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-17015N. | ||||||||||||
| IntAct | O43516. 11 interactions. | ||||||||||||
| MINT | MINT-238480. | ||||||||||||
| STRING | O43516. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | O43516. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | O43516. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000272746; ENSP00000272746; ENSG00000115935. ENST00000359761; ENSP00000352802; ENSG00000115935. ENST00000392546; ENSP00000376329; ENSG00000115935. ENST00000392547; ENSP00000376330; ENSG00000115935. | ||||||||||||
| GeneID | 7456. | ||||||||||||
| KEGG | hsa:7456. | ||||||||||||
| UCSC | uc002ujb.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 7456. | ||||||||||||
| GeneCards | GC02M175424. | ||||||||||||
| HGNC | HGNC:12736. WIPF1. | ||||||||||||
| HPA | CAB009737. HPA003739. | ||||||||||||
| MIM | 602357. gene. | ||||||||||||
| neXtProt | NX_O43516. | ||||||||||||
| PharmGKB | PA162409189. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG11638. | ||||||||||||
| GeneTree | ENSGT00580000081291. | ||||||||||||
| HOGENOM | HBG282906. | ||||||||||||
| HOVERGEN | HBG054157. | ||||||||||||
| InParanoid | O43516. | ||||||||||||
| OMA | ALDDKPP. | ||||||||||||
| OrthoDB | EOG49CQ90. | ||||||||||||
| PhylomeDB | O43516. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Pathway_Interaction_DB | fcer1pathway. Fc-epsilon receptor I signaling in mast cells. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | O43516. | ||||||||||||
| Bgee | O43516. | ||||||||||||
| CleanEx | HS_WIPF1. | ||||||||||||
| Genevestigator | O43516. | ||||||||||||
| GermOnline | ENSG00000115935. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR003124. WH2_actin-bd. [Graphical view] | ||||||||||||
| SMART | SM00246. WH2. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS51082. WH2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 29198. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | WIPF1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O43516 Secondary accession number(s): B8ZZM1 Q9UNP1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with