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Protein

60S ribosomal protein L16-C

Gene

rpl1603

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Miscellaneous

There are three genes for L16 in S.pombe.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SPO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SPO-72689. Formation of a pool of free 40S subunits.
R-SPO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SPO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SPO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L16-C
Gene namesi
Name:rpl1603
Synonyms:rpl16c
ORF Names:SPBC2G2.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC2G2.05.
PomBaseiSPBC2G2.05. rpl1603.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • cytosolic large ribosomal subunit Source: PomBase
  • nucleolus Source: PomBase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337901 – 19760S ribosomal protein L16-CAdd BLAST197

Proteomic databases

MaxQBiO43004.
PRIDEiO43004.

Interactioni

Protein-protein interaction databases

BioGridi276902. 13 interactors.
MINTiMINT-4674555.
STRINGi4896.SPBC2G2.05.1.

Structurei

3D structure databases

ProteinModelPortaliO43004.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000225289.
InParanoidiO43004.
KOiK02872.
OMAiCCQGINI.
OrthoDBiEOG092C5KDG.
PhylomeDBiO43004.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF8. PTHR11545:SF8. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

O43004-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEFQKLVII DAKGHLMGRL ASTVAKQLLA GQKVVVVRCE ELNISGHFFR
60 70 80 90 100
NKLKYLAYLR KACRYNPSRG AFHFRAPSRI FTKAVRGMLP HKTTRGNIAL
110 120 130 140 150
KNLQALEGIP PPFDKQKRLV VPAALRVLRL KPSRKYCTIG RLSSEVGWKY
160 170 180 190
KNIVSKLEER RKIKSAAFYQ AKSANQKHIN VAKTKSSVNE KLAVFGY
Length:197
Mass (Da):22,353
Last modified:June 1, 1998 - v1
Checksum:iC529CC6BB55E77D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA17885.1.
PIRiT40144.
RefSeqiNP_596434.1. NM_001022353.2.

Genome annotation databases

EnsemblFungiiSPBC2G2.05.1; SPBC2G2.05.1:pep; SPBC2G2.05.
GeneIDi2540373.
KEGGispo:SPBC2G2.05.

Similar proteinsi

Entry informationi

Entry nameiRL16C_SCHPO
AccessioniPrimary (citable) accession number: O43004
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: June 1, 1998
Last modified: July 5, 2017
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families