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Protein

60S ribosomal protein L16-B

Gene

rpl1601

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

There are three genes for L16 in S.pombe.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-SPO-1799339 SRP-dependent cotranslational protein targeting to membrane
R-SPO-72689 Formation of a pool of free 40S subunits
R-SPO-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-SPO-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-SPO-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L16-B
Gene namesi
Name:rpl1601
Synonyms:rpl16b
ORF Names:SPBC24E9.13c, SPBC839.13c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC839.13c
PomBaseiSPBC839.13c rpl1601

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337891 – 19760S ribosomal protein L16-BAdd BLAST197

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei193Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO42991
PaxDbiO42991
PRIDEiO42991

PTM databases

iPTMnetiO42991

Interactioni

Protein-protein interaction databases

BioGridi277689, 251 interactors
STRINGi4896.SPBC839.13c.1

Structurei

3D structure databases

ProteinModelPortaliO42991
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000225289
InParanoidiO42991
KOiK02872
OMAiYHNFLHK
OrthoDBiEOG092C5KDG
PhylomeDBiO42991

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

O42991-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEFQKVVVI DAKGHLLGRL ASVVAKQLLG GQKVVVVRCE ELNISGHFFR
60 70 80 90 100
NKLKYLAYLR KACRYNPSRG AFHFRAPSRI FQKAVRGMLP HKTARGQAAL
110 120 130 140 150
EHLQAVEGIP PPFDKQKRVV VPAALRVLRL KPGRKYCTVG RLSSEVGWKY
160 170 180 190
NDIVAKLEER RKVKSAAFYQ AKLAKQKKIA SAKEASPVNQ KLSQFGY
Length:197
Mass (Da):22,170
Last modified:June 1, 1998 - v1
Checksum:i9B758ECD6D622EC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB46706.1
AB016008 mRNA Translation: BAA31555.1
PIRiT40720
T43381
RefSeqiNP_595253.1, NM_001021159.2

Genome annotation databases

EnsemblFungiiSPBC839.13c.1; SPBC839.13c.1:pep; SPBC839.13c
GeneIDi2541175
KEGGispo:SPBC839.13c

Similar proteinsi

Entry informationi

Entry nameiRL16B_SCHPO
AccessioniPrimary (citable) accession number: O42991
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: June 1, 1998
Last modified: March 28, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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