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O42948

- YBPD_SCHPO

UniProt

O42948 - YBPD_SCHPO

Protein

Uncharacterized WD repeat-containing protein C16H5.13

Gene

SPBC16H5.13

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Jun 1998)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized WD repeat-containing protein C16H5.13
    Gene namesi
    ORF Names:SPBC16H5.13
    OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
    Taxonomic identifieri284812 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
    ProteomesiUP000002485: Chromosome II

    Organism-specific databases

    PomBaseiSPBC16H5.13.

    Subcellular locationi

    Cytoplasm 1 Publication. Nucleus 1 Publication

    GO - Cellular componenti

    1. cytosol Source: PomBase
    2. nucleus Source: PomBase
    3. protein complex Source: PomBase

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10261026Uncharacterized WD repeat-containing protein C16H5.13PRO_0000343432Add
    BLAST

    Proteomic databases

    MaxQBiO42948.

    Interactioni

    Protein-protein interaction databases

    BioGridi276469. 264 interactions.
    MINTiMINT-4674203.
    STRINGi4896.SPBC16H5.13-1.

    Structurei

    3D structure databases

    ProteinModelPortaliO42948.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati14 – 5340WD 1Add
    BLAST
    Repeati62 – 10443WD 2Add
    BLAST
    Repeati148 – 18740WD 3Add
    BLAST
    Repeati937 – 97741WD 4Add
    BLAST

    Sequence similaritiesi

    Contains 4 WD repeats.Curated

    Keywords - Domaini

    Repeat, WD repeat

    Phylogenomic databases

    eggNOGiopiNOG05818.
    OrthoDBiEOG725DRZ.

    Family and domain databases

    Gene3Di2.130.10.10. 3 hits.
    InterProiIPR015943. WD40/YVTN_repeat-like_dom.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    SUPFAMiSSF50978. SSF50978. 4 hits.

    Sequencei

    Sequence statusi: Complete.

    O42948-1 [UniParc]FASTAAdd to Basket

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    MDWVALSKSC KTHLLDEGLD VSSIHCFDQY LIVGQCSGQV MVFDVSTDNH     50
    FTLIQTFIAH KHSVSSIVCL PFEADGIVDL SIITLDESGL LCQWLLKTCD 100
    RRATLQLCDG LCLKLFRLNN NFLAVTGTFL KIYLIRISNF QIVATWTGHE 150
    DWPILFPFKD EALLIPVAYS DGSVSLWSVD WSALTFKRNS VTKADVKPTF 200
    GKVIDVVPAD CISSNYALYV YSDAVVLLES HEKFIASYSL AEITSVFVLA 250
    DGTACIFTLS SSTLLKLHQS PEPHFELISK YSGDFPWKSC TILKSKPVSL 300
    CVYPEKITFN WLTEGTVDSC NLCKLSNTAA VSYAYTDSLN LFLGTTSGLV 350
    MFSLFDWYLH NDPAPLYSFT RVSGIVTYMK IFETEHSRSI LVVATKTGKA 400
    YFYQQLQGER WRFLCERALQ SSSITKIIHA KKSLSSGSSG LFIFMSLDGS 450
    LCALDESYNL LSYLPSDGAQ VETLYSFPDL DQIYVAYDNF QLLNWDVVDQ 500
    KCSEGNYSDI IDSSFISIGT FDKSNLPTLY HGSCALLTDN LVTVFLDAHD 550
    LVLNLNFSNE NYIEKTYIDE FLDFIQPPFL NSDIEMEHQL LGTVFDQSSL 600
    HLGVGKPDGN AILRFDTEMK SIINTAPNCS ALLLYLYFSL MVPLCKYDGL 650
    SDTKLTEGIL LKLKDLKTVD YSISVLSYVW NNSGKVMQGI IKSMLSRTLE 700
    LISPEELQRL IYYYFEFFTT TGGEYYLKKE VQHSLYILSL IVSLRPSAFD 750
    VSQLKFLSSY LLQKSESMDY DLTAIRLLSN GFSVFSKHID PAKFIYNLVL 800
    SSLENTKDLD DKNSILYRSI VDVSVSNAVL LLTCLCDEVY EQMKSNLRSV 850
    ILKVVSLAIE NTQSEFSLFN QLITEKLLPI LYSSRSVEEV HDVTNAIATQ 900
    FPFACFDSKV EKYSYIDDGD LVVYEIAKRR KVVSKENAEC DIQVLSASPS 950
    GDYFVGVSAT QKECIIWKYS QDFVKFLNLS TPSLTIRKRI LLQTNKTNEV 1000
    EIPEVLWISQ SSAEVHIGST FAIIDL 1026
    Length:1,026
    Mass (Da):115,551
    Last modified:June 1, 1998 - v1
    Checksum:i07C05ADBB05240B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU329671 Genomic DNA. Translation: CAA17911.1.
    PIRiT39612.
    RefSeqiNP_595934.1. NM_001021842.2.

    Genome annotation databases

    EnsemblFungiiSPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
    GeneIDi2539925.
    KEGGispo:SPBC16H5.13.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU329671 Genomic DNA. Translation: CAA17911.1 .
    PIRi T39612.
    RefSeqi NP_595934.1. NM_001021842.2.

    3D structure databases

    ProteinModelPortali O42948.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 276469. 264 interactions.
    MINTi MINT-4674203.
    STRINGi 4896.SPBC16H5.13-1.

    Proteomic databases

    MaxQBi O42948.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii SPBC16H5.13.1 ; SPBC16H5.13.1:pep ; SPBC16H5.13 .
    GeneIDi 2539925.
    KEGGi spo:SPBC16H5.13.

    Organism-specific databases

    PomBasei SPBC16H5.13.

    Phylogenomic databases

    eggNOGi opiNOG05818.
    OrthoDBi EOG725DRZ.

    Miscellaneous databases

    NextBioi 20801068.

    Family and domain databases

    Gene3Di 2.130.10.10. 3 hits.
    InterProi IPR015943. WD40/YVTN_repeat-like_dom.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    SUPFAMi SSF50978. SSF50978. 4 hits.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Schizosaccharomyces pombe."
      Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
      , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
      Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 972 / ATCC 24843.
    2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
      Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
      Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiYBPD_SCHPO
    AccessioniPrimary (citable) accession number: O42948
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 1, 2008
    Last sequence update: June 1, 1998
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Schizosaccharomyces pombe
      Schizosaccharomyces pombe: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3