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O42948 (YBPD_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized WD repeat-containing protein C16H5.13
Gene names
ORF Names:SPBC16H5.13
OrganismSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) [Reference proteome]
Taxonomic identifier284812 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces

Protein attributes

Sequence length1026 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Cytoplasm. Nucleus Ref.2.

Sequence similarities

Contains 4 WD repeats.

Ontologies

Keywords
   Cellular componentCytoplasm
Nucleus
   DomainRepeat
WD repeat
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytosol

Inferred from direct assay Ref.2. Source: PomBase

nucleus

Inferred from direct assay Ref.2. Source: PomBase

protein complex

Non-traceable author statement. Source: PomBase

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10261026Uncharacterized WD repeat-containing protein C16H5.13
PRO_0000343432

Regions

Repeat14 – 5340WD 1
Repeat62 – 10443WD 2
Repeat148 – 18740WD 3
Repeat937 – 97741WD 4

Sequences

Sequence LengthMass (Da)Tools
O42948 [UniParc].

Last modified June 1, 1998. Version 1.
Checksum: 07C05ADBB05240B5

FASTA1,026115,551
        10         20         30         40         50         60 
MDWVALSKSC KTHLLDEGLD VSSIHCFDQY LIVGQCSGQV MVFDVSTDNH FTLIQTFIAH 

        70         80         90        100        110        120 
KHSVSSIVCL PFEADGIVDL SIITLDESGL LCQWLLKTCD RRATLQLCDG LCLKLFRLNN 

       130        140        150        160        170        180 
NFLAVTGTFL KIYLIRISNF QIVATWTGHE DWPILFPFKD EALLIPVAYS DGSVSLWSVD 

       190        200        210        220        230        240 
WSALTFKRNS VTKADVKPTF GKVIDVVPAD CISSNYALYV YSDAVVLLES HEKFIASYSL 

       250        260        270        280        290        300 
AEITSVFVLA DGTACIFTLS SSTLLKLHQS PEPHFELISK YSGDFPWKSC TILKSKPVSL 

       310        320        330        340        350        360 
CVYPEKITFN WLTEGTVDSC NLCKLSNTAA VSYAYTDSLN LFLGTTSGLV MFSLFDWYLH 

       370        380        390        400        410        420 
NDPAPLYSFT RVSGIVTYMK IFETEHSRSI LVVATKTGKA YFYQQLQGER WRFLCERALQ 

       430        440        450        460        470        480 
SSSITKIIHA KKSLSSGSSG LFIFMSLDGS LCALDESYNL LSYLPSDGAQ VETLYSFPDL 

       490        500        510        520        530        540 
DQIYVAYDNF QLLNWDVVDQ KCSEGNYSDI IDSSFISIGT FDKSNLPTLY HGSCALLTDN 

       550        560        570        580        590        600 
LVTVFLDAHD LVLNLNFSNE NYIEKTYIDE FLDFIQPPFL NSDIEMEHQL LGTVFDQSSL 

       610        620        630        640        650        660 
HLGVGKPDGN AILRFDTEMK SIINTAPNCS ALLLYLYFSL MVPLCKYDGL SDTKLTEGIL 

       670        680        690        700        710        720 
LKLKDLKTVD YSISVLSYVW NNSGKVMQGI IKSMLSRTLE LISPEELQRL IYYYFEFFTT 

       730        740        750        760        770        780 
TGGEYYLKKE VQHSLYILSL IVSLRPSAFD VSQLKFLSSY LLQKSESMDY DLTAIRLLSN 

       790        800        810        820        830        840 
GFSVFSKHID PAKFIYNLVL SSLENTKDLD DKNSILYRSI VDVSVSNAVL LLTCLCDEVY 

       850        860        870        880        890        900 
EQMKSNLRSV ILKVVSLAIE NTQSEFSLFN QLITEKLLPI LYSSRSVEEV HDVTNAIATQ 

       910        920        930        940        950        960 
FPFACFDSKV EKYSYIDDGD LVVYEIAKRR KVVSKENAEC DIQVLSASPS GDYFVGVSAT 

       970        980        990       1000       1010       1020 
QKECIIWKYS QDFVKFLNLS TPSLTIRKRI LLQTNKTNEV EIPEVLWISQ SSAEVHIGST 


FAIIDL 

« Hide

References

[1]"The genome sequence of Schizosaccharomyces pombe."
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. expand/collapse author list , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 972 / ATCC 24843.
[2]"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU329671 Genomic DNA. Translation: CAA17911.1.
PIRT39612.
RefSeqNP_595934.1. NM_001021842.2.

3D structure databases

ProteinModelPortalO42948.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid276469. 264 interactions.
MINTMINT-4674203.
STRING4896.SPBC16H5.13-1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiSPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
GeneID2539925.
KEGGspo:SPBC16H5.13.

Organism-specific databases

PomBaseSPBC16H5.13.

Phylogenomic databases

eggNOGopiNOG05818.
OrthoDBEOG725DRZ.

Family and domain databases

Gene3D2.130.10.10. 3 hits.
InterProIPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view]
SUPFAMSSF50978. SSF50978. 4 hits.
ProtoNetSearch...

Other

NextBio20801068.

Entry information

Entry nameYBPD_SCHPO
AccessionPrimary (citable) accession number: O42948
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 1998
Last modified: March 19, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Schizosaccharomyces pombe

Schizosaccharomyces pombe: entries and gene names