O42948 (YBPD_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized WD repeat-containing protein C16H5.13

Gene names

ORF Names:

SPBC16H5.13

Organism

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) [Reference proteome]

Taxonomic identifier

284812 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces › Schizosaccharomyces pombe

Protein attributes

Sequence length	1026 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Subcellular location	Cytoplasm. Nucleus Ref.2.
Sequence similarities	Contains 4 WD repeats.

Ontologies

Keywords
Cellular component	Cytoplasm Nucleus
Domain	Repeat WD repeat
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	cytosol Inferred from direct assay Ref.2. Source: PomBase nucleus Inferred from direct assay Ref.2. Source: PomBase protein complex Non-traceable author statement. Source: PomBase
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 1026	1026	Uncharacterized WD repeat-containing protein C16H5.13		PRO_0000343432
Regions
	Repeat	14 – 53	40	WD 1
	Repeat	62 – 104	43	WD 2
	Repeat	148 – 187	40	WD 3
	Repeat	937 – 977	41	WD 4

Sequences

	Sequence		Length	Mass (Da)
	O42948 [UniParc]. Last modified June 1, 1998. Version 1. Checksum: 07C05ADBB05240B5	FASTA	1,026	115,551
	10 20 30 40 50 60 MDWVALSKSC KTHLLDEGLD VSSIHCFDQY LIVGQCSGQV MVFDVSTDNH FTLIQTFIAH 70 80 90 100 110 120 KHSVSSIVCL PFEADGIVDL SIITLDESGL LCQWLLKTCD RRATLQLCDG LCLKLFRLNN 130 140 150 160 170 180 NFLAVTGTFL KIYLIRISNF QIVATWTGHE DWPILFPFKD EALLIPVAYS DGSVSLWSVD 190 200 210 220 230 240 WSALTFKRNS VTKADVKPTF GKVIDVVPAD CISSNYALYV YSDAVVLLES HEKFIASYSL 250 260 270 280 290 300 AEITSVFVLA DGTACIFTLS SSTLLKLHQS PEPHFELISK YSGDFPWKSC TILKSKPVSL 310 320 330 340 350 360 CVYPEKITFN WLTEGTVDSC NLCKLSNTAA VSYAYTDSLN LFLGTTSGLV MFSLFDWYLH 370 380 390 400 410 420 NDPAPLYSFT RVSGIVTYMK IFETEHSRSI LVVATKTGKA YFYQQLQGER WRFLCERALQ 430 440 450 460 470 480 SSSITKIIHA KKSLSSGSSG LFIFMSLDGS LCALDESYNL LSYLPSDGAQ VETLYSFPDL 490 500 510 520 530 540 DQIYVAYDNF QLLNWDVVDQ KCSEGNYSDI IDSSFISIGT FDKSNLPTLY HGSCALLTDN 550 560 570 580 590 600 LVTVFLDAHD LVLNLNFSNE NYIEKTYIDE FLDFIQPPFL NSDIEMEHQL LGTVFDQSSL 610 620 630 640 650 660 HLGVGKPDGN AILRFDTEMK SIINTAPNCS ALLLYLYFSL MVPLCKYDGL SDTKLTEGIL 670 680 690 700 710 720 LKLKDLKTVD YSISVLSYVW NNSGKVMQGI IKSMLSRTLE LISPEELQRL IYYYFEFFTT 730 740 750 760 770 780 TGGEYYLKKE VQHSLYILSL IVSLRPSAFD VSQLKFLSSY LLQKSESMDY DLTAIRLLSN 790 800 810 820 830 840 GFSVFSKHID PAKFIYNLVL SSLENTKDLD DKNSILYRSI VDVSVSNAVL LLTCLCDEVY 850 860 870 880 890 900 EQMKSNLRSV ILKVVSLAIE NTQSEFSLFN QLITEKLLPI LYSSRSVEEV HDVTNAIATQ 910 920 930 940 950 960 FPFACFDSKV EKYSYIDDGD LVVYEIAKRR KVVSKENAEC DIQVLSASPS GDYFVGVSAT 970 980 990 1000 1010 1020 QKECIIWKYS QDFVKFLNLS TPSLTIRKRI LLQTNKTNEV EIPEVLWISQ SSAEVHIGST FAIIDL

References

[1]

"The genome sequence of Schizosaccharomyces pombe." Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P. Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 972 / ATCC 24843.

[2]

"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe." Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M. Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU329671 Genomic DNA. Translation: CAA17911.1.
PIR	T39612.
RefSeq	NP_595934.1. NM_001021842.2.
3D structure databases
ProteinModelPortal	O42948.
ModBase	Search...
Protein-protein interaction databases
MINT	MINT-4674203.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	SPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
GeneID	2539925.
KEGG	spo:SPBC16H5.13.
Organism-specific databases
PomBase	SPBC16H5.13.
Phylogenomic databases
eggNOG	opiNOG05818.
OrthoDB	EOG476P89.
Family and domain databases
Gene3D	2.130.10.10. 3 hits.
InterPro	IPR015943. WD40/YVTN_repeat-like_dom. IPR017986. WD40_repeat_dom. [Graphical view]
SUPFAM	SSF50978. WD40_like. 1 hit.
PROSITE	PS00678. WD_REPEATS_1. False negative. PS50082. WD_REPEATS_2. False negative. PS50294. WD_REPEATS_REGION. False negative. [Graphical view]
ProtoNet	Search...
Other
NextBio	20801068.

Entry information

Entry name

YBPD_SCHPO

Accession

Primary (citable) accession number: O42948

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 2008
Last sequence update:	June 1, 1998
Last modified:	May 29, 2013
This is version 71 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program