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O42948

- YBPD_SCHPO

UniProt

O42948 - YBPD_SCHPO

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Protein

Uncharacterized WD repeat-containing protein C16H5.13

Gene

SPBC16H5.13

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C16H5.13
Gene namesi
ORF Names:SPBC16H5.13
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
ProteomesiUP000002485: Chromosome II

Organism-specific databases

PomBaseiSPBC16H5.13.

Subcellular locationi

Cytoplasm 1 Publication. Nucleus 1 Publication

GO - Cellular componenti

  1. cytosol Source: PomBase
  2. nucleus Source: PomBase
  3. protein complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10261026Uncharacterized WD repeat-containing protein C16H5.13PRO_0000343432Add
BLAST

Proteomic databases

MaxQBiO42948.

Interactioni

Protein-protein interaction databases

BioGridi276469. 264 interactions.
MINTiMINT-4674203.
STRINGi4896.SPBC16H5.13-1.

Structurei

3D structure databases

ProteinModelPortaliO42948.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati14 – 5340WD 1Add
BLAST
Repeati62 – 10443WD 2Add
BLAST
Repeati148 – 18740WD 3Add
BLAST
Repeati937 – 97741WD 4Add
BLAST

Sequence similaritiesi

Contains 4 WD repeats.Curated

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiopiNOG05818.
InParanoidiO42948.
OrthoDBiEOG725DRZ.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 4 hits.

Sequencei

Sequence statusi: Complete.

O42948-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDWVALSKSC KTHLLDEGLD VSSIHCFDQY LIVGQCSGQV MVFDVSTDNH
60 70 80 90 100
FTLIQTFIAH KHSVSSIVCL PFEADGIVDL SIITLDESGL LCQWLLKTCD
110 120 130 140 150
RRATLQLCDG LCLKLFRLNN NFLAVTGTFL KIYLIRISNF QIVATWTGHE
160 170 180 190 200
DWPILFPFKD EALLIPVAYS DGSVSLWSVD WSALTFKRNS VTKADVKPTF
210 220 230 240 250
GKVIDVVPAD CISSNYALYV YSDAVVLLES HEKFIASYSL AEITSVFVLA
260 270 280 290 300
DGTACIFTLS SSTLLKLHQS PEPHFELISK YSGDFPWKSC TILKSKPVSL
310 320 330 340 350
CVYPEKITFN WLTEGTVDSC NLCKLSNTAA VSYAYTDSLN LFLGTTSGLV
360 370 380 390 400
MFSLFDWYLH NDPAPLYSFT RVSGIVTYMK IFETEHSRSI LVVATKTGKA
410 420 430 440 450
YFYQQLQGER WRFLCERALQ SSSITKIIHA KKSLSSGSSG LFIFMSLDGS
460 470 480 490 500
LCALDESYNL LSYLPSDGAQ VETLYSFPDL DQIYVAYDNF QLLNWDVVDQ
510 520 530 540 550
KCSEGNYSDI IDSSFISIGT FDKSNLPTLY HGSCALLTDN LVTVFLDAHD
560 570 580 590 600
LVLNLNFSNE NYIEKTYIDE FLDFIQPPFL NSDIEMEHQL LGTVFDQSSL
610 620 630 640 650
HLGVGKPDGN AILRFDTEMK SIINTAPNCS ALLLYLYFSL MVPLCKYDGL
660 670 680 690 700
SDTKLTEGIL LKLKDLKTVD YSISVLSYVW NNSGKVMQGI IKSMLSRTLE
710 720 730 740 750
LISPEELQRL IYYYFEFFTT TGGEYYLKKE VQHSLYILSL IVSLRPSAFD
760 770 780 790 800
VSQLKFLSSY LLQKSESMDY DLTAIRLLSN GFSVFSKHID PAKFIYNLVL
810 820 830 840 850
SSLENTKDLD DKNSILYRSI VDVSVSNAVL LLTCLCDEVY EQMKSNLRSV
860 870 880 890 900
ILKVVSLAIE NTQSEFSLFN QLITEKLLPI LYSSRSVEEV HDVTNAIATQ
910 920 930 940 950
FPFACFDSKV EKYSYIDDGD LVVYEIAKRR KVVSKENAEC DIQVLSASPS
960 970 980 990 1000
GDYFVGVSAT QKECIIWKYS QDFVKFLNLS TPSLTIRKRI LLQTNKTNEV
1010 1020
EIPEVLWISQ SSAEVHIGST FAIIDL
Length:1,026
Mass (Da):115,551
Last modified:June 1, 1998 - v1
Checksum:i07C05ADBB05240B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU329671 Genomic DNA. Translation: CAA17911.1.
PIRiT39612.
RefSeqiNP_595934.1. NM_001021842.2.

Genome annotation databases

EnsemblFungiiSPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
GeneIDi2539925.
KEGGispo:SPBC16H5.13.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU329671 Genomic DNA. Translation: CAA17911.1 .
PIRi T39612.
RefSeqi NP_595934.1. NM_001021842.2.

3D structure databases

ProteinModelPortali O42948.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 276469. 264 interactions.
MINTi MINT-4674203.
STRINGi 4896.SPBC16H5.13-1.

Proteomic databases

MaxQBi O42948.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii SPBC16H5.13.1 ; SPBC16H5.13.1:pep ; SPBC16H5.13 .
GeneIDi 2539925.
KEGGi spo:SPBC16H5.13.

Organism-specific databases

PomBasei SPBC16H5.13.

Phylogenomic databases

eggNOGi opiNOG05818.
InParanoidi O42948.
OrthoDBi EOG725DRZ.

Miscellaneous databases

NextBioi 20801068.

Family and domain databases

Gene3Di 2.130.10.10. 3 hits.
InterProi IPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view ]
SUPFAMi SSF50978. SSF50978. 4 hits.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYBPD_SCHPO
AccessioniPrimary (citable) accession number: O42948
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 1998
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3