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Protein

Uncharacterized WD repeat-containing protein C16H5.13

Gene

SPBC16H5.13

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C16H5.13
Gene namesi
ORF Names:SPBC16H5.13
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC16H5.13.
PomBaseiSPBC16H5.13.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • nucleus Source: PomBase
  • protein complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003434321 – 1026Uncharacterized WD repeat-containing protein C16H5.13Add BLAST1026

Proteomic databases

MaxQBiO42948.
PRIDEiO42948.

Interactioni

Protein-protein interaction databases

BioGridi276469. 264 interactors.
MINTiMINT-4674203.

Structurei

3D structure databases

ProteinModelPortaliO42948.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati14 – 53WD 1Add BLAST40
Repeati62 – 104WD 2Add BLAST43
Repeati148 – 187WD 3Add BLAST40
Repeati937 – 977WD 4Add BLAST41

Sequence similaritiesi

Contains 4 WD repeats.Curated

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

InParanoidiO42948.
OrthoDBiEOG092C0N5D.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 4 hits.

Sequencei

Sequence statusi: Complete.

O42948-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDWVALSKSC KTHLLDEGLD VSSIHCFDQY LIVGQCSGQV MVFDVSTDNH
60 70 80 90 100
FTLIQTFIAH KHSVSSIVCL PFEADGIVDL SIITLDESGL LCQWLLKTCD
110 120 130 140 150
RRATLQLCDG LCLKLFRLNN NFLAVTGTFL KIYLIRISNF QIVATWTGHE
160 170 180 190 200
DWPILFPFKD EALLIPVAYS DGSVSLWSVD WSALTFKRNS VTKADVKPTF
210 220 230 240 250
GKVIDVVPAD CISSNYALYV YSDAVVLLES HEKFIASYSL AEITSVFVLA
260 270 280 290 300
DGTACIFTLS SSTLLKLHQS PEPHFELISK YSGDFPWKSC TILKSKPVSL
310 320 330 340 350
CVYPEKITFN WLTEGTVDSC NLCKLSNTAA VSYAYTDSLN LFLGTTSGLV
360 370 380 390 400
MFSLFDWYLH NDPAPLYSFT RVSGIVTYMK IFETEHSRSI LVVATKTGKA
410 420 430 440 450
YFYQQLQGER WRFLCERALQ SSSITKIIHA KKSLSSGSSG LFIFMSLDGS
460 470 480 490 500
LCALDESYNL LSYLPSDGAQ VETLYSFPDL DQIYVAYDNF QLLNWDVVDQ
510 520 530 540 550
KCSEGNYSDI IDSSFISIGT FDKSNLPTLY HGSCALLTDN LVTVFLDAHD
560 570 580 590 600
LVLNLNFSNE NYIEKTYIDE FLDFIQPPFL NSDIEMEHQL LGTVFDQSSL
610 620 630 640 650
HLGVGKPDGN AILRFDTEMK SIINTAPNCS ALLLYLYFSL MVPLCKYDGL
660 670 680 690 700
SDTKLTEGIL LKLKDLKTVD YSISVLSYVW NNSGKVMQGI IKSMLSRTLE
710 720 730 740 750
LISPEELQRL IYYYFEFFTT TGGEYYLKKE VQHSLYILSL IVSLRPSAFD
760 770 780 790 800
VSQLKFLSSY LLQKSESMDY DLTAIRLLSN GFSVFSKHID PAKFIYNLVL
810 820 830 840 850
SSLENTKDLD DKNSILYRSI VDVSVSNAVL LLTCLCDEVY EQMKSNLRSV
860 870 880 890 900
ILKVVSLAIE NTQSEFSLFN QLITEKLLPI LYSSRSVEEV HDVTNAIATQ
910 920 930 940 950
FPFACFDSKV EKYSYIDDGD LVVYEIAKRR KVVSKENAEC DIQVLSASPS
960 970 980 990 1000
GDYFVGVSAT QKECIIWKYS QDFVKFLNLS TPSLTIRKRI LLQTNKTNEV
1010 1020
EIPEVLWISQ SSAEVHIGST FAIIDL
Length:1,026
Mass (Da):115,551
Last modified:June 1, 1998 - v1
Checksum:i07C05ADBB05240B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA17911.1.
PIRiT39612.
RefSeqiNP_595934.1. NM_001021842.2.

Genome annotation databases

EnsemblFungiiSPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
GeneIDi2539925.
KEGGispo:SPBC16H5.13.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA17911.1.
PIRiT39612.
RefSeqiNP_595934.1. NM_001021842.2.

3D structure databases

ProteinModelPortaliO42948.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276469. 264 interactors.
MINTiMINT-4674203.

Proteomic databases

MaxQBiO42948.
PRIDEiO42948.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC16H5.13.1; SPBC16H5.13.1:pep; SPBC16H5.13.
GeneIDi2539925.
KEGGispo:SPBC16H5.13.

Organism-specific databases

EuPathDBiFungiDB:SPBC16H5.13.
PomBaseiSPBC16H5.13.

Phylogenomic databases

InParanoidiO42948.
OrthoDBiEOG092C0N5D.

Miscellaneous databases

PROiO42948.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 4 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiYBPD_SCHPO
AccessioniPrimary (citable) accession number: O42948
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 1998
Last modified: October 5, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.