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Protein
Submitted name:

MADS-box homolog Umc1

Gene

umc1

Organism
Ustilago maydis (Corn smut fungus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
MADS-box homolog Umc1Imported
Gene namesi
Name:umc1Imported
OrganismiUstilago maydis (Corn smut fungus)Imported
Taxonomic identifieri5270 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi5270.UM01224P0.

Structurei

3D structure databases

ProteinModelPortaliO42725.
SMRiO42725. Positions 100-180.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini98 – 15861MADS-boxInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 MADS-box domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG0015. Eukaryota.
COG5068. LUCA.

Family and domain databases

InterProiIPR000637. HMGI/Y_DNA-bd_CS.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS00354. HMGI_Y. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42725-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLSAGIVG VRQAGSSSNS PVYDTPFGTV QLASSSKDLS ANFDLTAGFA
60 70 80 90 100
ASADYENQED EDDEEGDDDD GDSEDGKGKG KKGKRARSEA KGERDLKTGR
110 120 130 140 150
RKIKIEFIED DARRHITFSK RKAGIMKKAY ELATLTGTQV LLLVVSQTGL
160 170 180 190 200
VYTFTTPKLQ ALVTQAEGRN LIQACLNAPD PPNGGGESGG EDHSGDEPSE
210 220 230 240 250
ADDAFSPSES QASSNKRAVQ PRKRPRTAST SKSSSASTSV AGAAPGIGGG
260 270 280 290 300
EEDATSGSQL ATVKRGRGRP RKNTAGNAPA SSSNTSNDAH PMPPPPAMHQ
310 320 330 340 350
SFSDDAVHQH HQHQHHQHQH RQQQQQQQQY THVPSADFPN YTAAGFYGDV
360 370 380 390 400
PNSAANPDLG FGQAGGLSID NQAVWAQTMS PNPNQMFDPS NHHQHHQQQQ
410 420 430 440 450
QPGQQQSSQQ QSQQQQQQQS SVQFGYATQH FGHFNPQQLA AMQPQEIQAP

RPAW
Length:454
Mass (Da):48,807
Last modified:June 1, 1998 - v1
Checksum:i398642CC60F4636D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF020538 Genomic DNA. Translation: AAB92597.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF020538 Genomic DNA. Translation: AAB92597.1.

3D structure databases

ProteinModelPortaliO42725.
SMRiO42725. Positions 100-180.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5270.UM01224P0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0015. Eukaryota.
COG5068. LUCA.

Family and domain databases

InterProiIPR000637. HMGI/Y_DNA-bd_CS.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS00354. HMGI_Y. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO42725_USTMD
AccessioniPrimary (citable) accession number: O42725
Secondary accession number(s): Q4PF89
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: May 11, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.