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Protein

RDS/peripherin-like protein xRDS36

Gene

rds36

Organism
Xenopus laevis (African clawed frog)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
RDS/peripherin-like protein xRDS36
Gene namesi
Name:rds36
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-17334124. rom1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 24CytoplasmicSequence analysisAdd BLAST24
Transmembranei25 – 43HelicalSequence analysisAdd BLAST19
Topological domaini44 – 61LumenalSequence analysisAdd BLAST18
Transmembranei62 – 80HelicalSequence analysisAdd BLAST19
Topological domaini81 – 99CytoplasmicSequence analysisAdd BLAST19
Transmembranei100 – 123HelicalSequence analysisAdd BLAST24
Topological domaini124 – 264LumenalSequence analysisAdd BLAST141
Transmembranei265 – 290HelicalSequence analysisAdd BLAST26
Topological domaini291 – 345CytoplasmicSequence analysisAdd BLAST55

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001681151 – 345RDS/peripherin-like protein xRDS36Add BLAST345

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi54N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi229N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein

Expressioni

Tissue specificityi

Rod specific.

Interactioni

Subunit structurei

Homodimer; disulfide-linked.

Family & Domainsi

Sequence similaritiesi

Belongs to the PRPH2/ROM1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOVERGENiHBG004964.
KOiK17343.

Family and domain databases

Gene3Di1.10.1450.10. 1 hit.
InterProiView protein in InterPro
IPR000830. Peripherin/rom-1.
IPR018498. Peripherin/rom-1_CS.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2_sf.
PfamiView protein in Pfam
PF00335. Tetraspannin. 1 hit.
PRINTSiPR00218. PERIPHERNRDS.
SUPFAMiSSF48652. SSF48652. 2 hits.
PROSITEiView protein in PROSITE
PS00930. RDS_ROM1. 1 hit.

Sequencei

Sequence statusi: Complete.

O42582-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLFKAKFSF QRRVKLAQTL WLLSWLSVLV GCLTFGMGIF LKVQLWIHNE
60 70 80 90 100
VMDNTTAHAV PNTVITAGLV GILLGYFAGK ISQASMDLTK YQRWKSFMMP
110 120 130 140 150
FFFLAILSCI VCLAALVLSV ALRGTLEESL KIGLRNAIRF YKDTDTPGRC
160 170 180 190 200
YQKRSMDKLE MDFQCCGNNH PKDWFEVQWI SNRYLDFSSK EVKDRIKSSV
210 220 230 240 250
DGRYLMDSVP FTCCNPSSPR PCIQIEITNN SAHYSYNFQG DDVNIWVRGC
260 270 280 290 300
REALLGYYTG IMATNGAAVT LSFLLQASVL VSLRYVQTSM DKIRDPDDVE
310 320 330 340
ADTEGFLLEK GVMETVNSSL EKIKDLFKSN QVETAEGGGE GAAGS
Length:345
Mass (Da):38,727
Last modified:January 1, 1998 - v1
Checksum:iDF8F0BC2FB8DF778
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L79914 mRNA. Translation: AAB64232.1.
RefSeqiNP_001081693.1. NM_001088224.1.
UniGeneiXl.191.

Genome annotation databases

GeneIDi398001.
KEGGixla:398001.

Similar proteinsi

Entry informationi

Entry nameiRDS2_XENLA
AccessioniPrimary (citable) accession number: O42582
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 1, 1998
Last modified: November 22, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families