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Protein
Submitted name:

CXC chemokine receptor

Gene
N/A
Organism
Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptorUniRule annotationSAAS annotation, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Submitted name:
CXC chemokine receptorImported
OrganismiOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)Imported
Taxonomic identifieri8022 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeOncorhynchus

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei41 – 6626HelicalSequence analysisAdd
BLAST
Transmembranei78 – 9821HelicalSequence analysisAdd
BLAST
Transmembranei104 – 13229HelicalSequence analysisAdd
BLAST
Transmembranei153 – 17119HelicalSequence analysisAdd
BLAST
Transmembranei209 – 22921HelicalSequence analysisAdd
BLAST
Transmembranei250 – 27728HelicalSequence analysisAdd
BLAST
Transmembranei289 – 31224HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

ProteinModelPortaliO42445.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini57 – 309253G_PROTEIN_RECEP_F1_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the G-protein coupled receptor 1 family.UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

HOVERGENiHBG106917.

Family and domain databases

InterProiIPR000355. Chemokine_rcpt.
IPR033039. CXCR4.
IPR001277. CXCR4/ACKR2.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PANTHERiPTHR10489:SF594. PTHR10489:SF594. 1 hit.
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR00657. CCCHEMOKINER.
PR00645. CXCCHMKINER4.
PR00237. GPCRRHODOPSN.
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42445-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSYYETIIF YNDNSSEESG DYDLGYEEPC NRVSGDDFQR IFLPTVYGII
60 70 80 90 100
FLLGIVGNGL VLIVMGYQKK VQTKTDKYRL HLSVADLLFV LTLPFWAVDA
110 120 130 140 150
ASSWYFGGIL CTAVHVIYTI NLYSSVLILA FISMDRYLAV VHATKSQSTR
160 170 180 190 200
TFLADRVIYV AVWLPAVILT VPDIVFATAL DGGSRTICQR IYPQKTSFYW
210 220 230 240 250
MAGFRFQHIL VGFVLPGLVI LTCYCIIIAK LSQGAKGQVL KRKALKTTVI
260 270 280 290 300
LILCFFSCWL PYCVGIFLDT LMLLNVISHS CALEQSLQTW LLITEALAYF
310 320 330 340 350
HCCLNPILYA FLGVKFKKSA RDALAVNSSS SHKVLTKKRG AISSVSTESE

SSSVLCS
Length:357
Mass (Da):39,818
Last modified:November 1, 1998 - v2
Checksum:i14EC2F01DA1222C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ001039 mRNA. Translation: CAA04493.1.
RefSeqiNP_001117814.1. NM_001124342.1.
UniGeneiOmy.11892.

Genome annotation databases

GeneIDi100136014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ001039 mRNA. Translation: CAA04493.1.
RefSeqiNP_001117814.1. NM_001124342.1.
UniGeneiOmy.11892.

3D structure databases

ProteinModelPortaliO42445.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

GPCRDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100136014.

Phylogenomic databases

HOVERGENiHBG106917.

Family and domain databases

InterProiIPR000355. Chemokine_rcpt.
IPR033039. CXCR4.
IPR001277. CXCR4/ACKR2.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PANTHERiPTHR10489:SF594. PTHR10489:SF594. 1 hit.
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR00657. CCCHEMOKINER.
PR00645. CXCCHMKINER4.
PR00237. GPCRRHODOPSN.
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO42445_ONCMY
AccessioniPrimary (citable) accession number: O42445
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.