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Protein

Photoreceptor outer segment membrane glycoprotein 2

Gene
N/A
Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Photoreceptor outer segment membrane glycoprotein 2
Alternative name(s):
CRDS2
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 24CytoplasmicSequence analysisAdd BLAST24
Transmembranei25 – 43HelicalSequence analysisAdd BLAST19
Topological domaini44 – 61LumenalSequence analysisAdd BLAST18
Transmembranei62 – 80HelicalSequence analysisAdd BLAST19
Topological domaini81 – 99CytoplasmicSequence analysisAdd BLAST19
Transmembranei100 – 123HelicalSequence analysisAdd BLAST24
Topological domaini124 – 264LumenalSequence analysisAdd BLAST141
Transmembranei265 – 290HelicalSequence analysisAdd BLAST26
Topological domaini291 – 364CytoplasmicSequence analysisAdd BLAST74

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001681161 – 364Photoreceptor outer segment membrane glycoprotein 2Add BLAST364

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi229N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiO42282.
PRIDEiO42282.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000014944.

Family & Domainsi

Sequence similaritiesi

Belongs to the PRPH2/ROM1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3882. Eukaryota.
ENOG4111IRY. LUCA.
HOGENOMiHOG000026780.
HOVERGENiHBG004964.
KOiK17343.
PhylomeDBiO42282.

Family and domain databases

Gene3Di1.10.1450.10. 1 hit.
InterProiView protein in InterPro
IPR000830. Peripherin/rom-1.
IPR018498. Peripherin/rom-1_CS.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2.
PfamiView protein in Pfam
PF00335. Tetraspannin. 1 hit.
PRINTSiPR00218. PERIPHERNRDS.
SUPFAMiSSF48652. SSF48652. 2 hits.
PROSITEiView protein in PROSITE
PS00930. RDS_ROM1. 1 hit.

Sequencei

Sequence statusi: Complete.

O42282-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVLKVKFTK TKRDKLAQIL WILNWVSVVS GIILFSLGLF LKIEIKKRNE
60 70 80 90 100
VMAKGDINSV PNMLISVGVI ACVVNFLGGK ICYDCSDANK FSRWKLIMLP
110 120 130 140 150
YIICTFCFTF CILLGALMCY TMRNELEESL YLGLRDAIKF YKDTDIPGRC
160 170 180 190 200
FLKKTVDMLQ IGFQCCGNNG FRDWFEVQWV SARYLNMASK EVMDRFKSNV
210 220 230 240 250
DGKFLVDGVP FSCCNPSSPR PCIQYHLTNN SAHYNYDFLT EELNIWVKGC
260 270 280 290 300
REALLEYYTA IMRSIGIAAL LIWLFELSVL IGVRYLQTAM KNVLLQGDLQ
310 320 330 340 350
GESDGWLLEN SFVETAKYNI NIIKNLGKAN QISTVSGMND PNINVQNTNC
360
GKSNVTAKSI PAAS
Length:364
Mass (Da):41,181
Last modified:January 1, 1998 - v1
Checksum:i103DF550D4573EB3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031239 mRNA. Translation: AAC06275.1.
RefSeqiNP_990368.1. NM_205037.1.
UniGeneiGga.531.

Genome annotation databases

GeneIDi395898.
KEGGigga:395898.

Similar proteinsi

Entry informationi

Entry nameiRDS2_CHICK
AccessioniPrimary (citable) accession number: O42282
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 1, 1998
Last modified: May 10, 2017
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families